Oncorhynchus masou masou (cherry salmon): 135523823
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Entry
135523823 CDS
T10723
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135523823 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
omm03400
]
135523823 (msh2)
DNA repair and recombination proteins [BR:
omm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135523823 (msh2)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
135523823
NCBI-ProteinID:
XP_064806832
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Position
31:32482426..32500855
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AA seq
928 aa
AA seq
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MAVQPKQSLSMDAAAEHGFLTYYFSMPEKPDTTFRVFDRGDYYTVHGTEALFAAKEIFKT
NGVIKTLGSGSRKLESVVLSKTNFEALVRDLLLVKQYRVEVYRNQSKTKDHSWQLEYKAS
PGNLSQFEEVLFGGAEGRGAGSAGVVAVRLAVGGDGQRVVGVGYVDASLRTMGVCEFLDG
ETFCNLEALLVQLSPKECLLPQGDNTDNIRQVVQRGGVLLSDRKRTEFSSKDMTQDLNRL
LRTRKGEANACNVLPELDKQVAMSCLAAVVRYLELLSDQSNFSSFSLTTLDLSQYMRLDN
AAVQALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLDLVE
CLVNDGEARQTLQDDLLRRFPDLHRLSKKFHRLSATLQDCYRGYQAVGQIPALLLALEKH
QGSHQMLLEAVFISPLRDLQADFIKYQEMIETTLDMNQVEHHEFLVKASFDPVLSELREK
MDTLENSMQSVLNSAARELGLDAGKTVKLECNSVLGYYLRVTCKEEKSLRNNKTFTTLDV
QKNGVRFTNSKLSSLNEDYTRNREEYEEAQNAIVKEIISIAAGYVDPLQSLSDVIAQLDA
VVSFSVASVSAPIPYVRPRLLAADCRRLELQQARHPCLESDADTSFIPNDISFIQGEQSF
YIITGPNMGGKSTFIRQVGVISLMAQIGCFVPCENAELSMIDSCLCRVGAGDSQLKGVST
FMSEMLETAAILRAATKNSLIIIDELGRGTSTFDGFGLAWAISEHIASKIGCFCLFATHF
HELTALATHHPTVRNLHVTALTTQHTLTMLYRVKPGVCDQSFGIHVAELACFPPAVVAMA
KQKAAELEEFQEEPSGEEGPEAKKRRSDKREGEVLIQSFLEKVKSLPAVTMTDQEVKAEL
RAMKQELVAHNNAYITELLARSAPIHTT
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacagagcttgtccatggatgccgctgccgaacatggcttcctt
acctactacttttccatgccggagaagccagacaccactttcagggtcttcgaccggggt
gactactacacggtgcacgggaccgaagcgctgttcgccgccaaggagattttcaagacc
aacggagtcatcaagaccctgggctcaggtagccgcaagctggagagtgtggttctcagc
aagacaaactttgaggctctggtcagagacctgctgctggtgaaacaatacagagtggaa
gtctacaggaaccaaagcaaaaccaaggatcacagctggcaactggagtacaaggcgtct
ccagggaatctgagccagtttgaggaggttctatttggcggggctgagggaagaggggct
ggctcagcgggggttgtggccgtacggttggctgtcgggggtgacggacagcgcgtggtg
ggcgtgggctatgtggacgcgtccctaaggaccatgggagtgtgcgagttccttgatgga
gagactttctgtaacctggaggctctgcttgtgcagctgagccctaaggaatgtctgcta
ccacagggtgacaacactgataacatacgacaggtggtgcagcgtggcggtgtgttgctg
tcagacagaaagagaacagagttcagtagtaaagacatgacccaggacctcaaccgactg
ctacggaccaggaaaggggaggccaacgcctgcaacgttctgcctgaactagacaaacag
gtagctatgtcatgcttggcagcagtggttcgttacctggaattgctgtctgaccaatca
aacttcagctccttcagcttgacgacccttgacctgagccagtacatgaggctggacaac
gctgccgtacaagccctcaacctatttcagggttctcccgatgacaccagtggagcccac
tcattggccgggcttctgaataagtgccgcacccctcagggccagcgattggtcaaccag
tggatcaaacagccactcatggacaagaacaggattgaggagagactggacctggtagag
tgcctcgtgaatgacggtgaggccagacagactcttcaggacgatctgttgcggcggttc
ccagatctccaccgcttgtccaaaaagtttcaccggctctcggcaacactgcaggactgt
taccgcggttaccaggccgtgggccagatccctgcacttctgttggctctggagaaacac
caaggaagtcaccagatgctgttggaggctgtgttcatctctcctctcagagacctgcag
gctgacttcatcaagtaccaggagatgatagaaactacactggatatgaaccaggtggag
caccatgagttcctggtgaaggcgtcgtttgacccggtgctctctgagctgagggagaag
atggacacactggagaacagcatgcagagtgtactgaacagcgcagcacgggaactgggt
ctggatgctggtaagacagtgaagttggagtgtaacagtgtgttggggtattacctgagg
gtgacctgtaaagaggagaagagtctgaggaacaacaaaacgttcacaacgctagacgtc
cagaagaatggagtccgtttcaccaacagtaagctgagttctttgaatgaagactacacc
aggaacagagaggagtatgaggaggctcagaacgccatcgttaaggagatcatcagcatc
gccgcgggttacgtggaccccctgcagtcgttgagtgacgtcatcgcccagctggatgcg
gtggtcagcttctctgtggcgtcagtctctgcccccatcccctacgtcaggccacgcctc
ctggctgcggactgcaggcgcctggagctccaacaggccagacacccctgcctggagtcg
gacgcagacacatccttcattcctaatgatatatccttcatacagggggagcagagcttc
tatatcatcacaggtcctaatatgggcgggaagtctaccttcatcaggcaggtgggcgtg
atctctctgatggctcagattggctgctttgtcccctgtgagaatgcggagctaagcatg
attgacagctgtctgtgccgtgtgggggcgggggatagccagctcaagggcgtgtctaca
tttatgtccgagatgctggagactgcagctattctccgcgctgccacaaagaactctcta
ataataatcgatgagttgggtcgcggaacatctacattcgatggctttggtctggcctgg
gccatcagtgaacacatcgcctcgaagattggctgcttctgtctgtttgccactcacttc
catgagcttacggcgttggccacacaccaccccaccgtccgcaacctgcacgtcaccgct
ctgaccactcaacacacactcaccatgctctacagggtcaaaccaggtgtgtgtgaccag
agttttgggatccatgtggcggagttggcttgtttcccgccggcggtggttgccatggca
aagcagaaggctgcagaactggaggagtttcaggaggagccaagtggggaggaggggcca
gaggccaagaaacgacgcagcgataaacgggagggagaggtattgatccagtcgtttctg
gagaaggtgaaatctctgccggcagtcaccatgactgaccaggaggtgaaggcggagctt
agagccatgaagcaggagcttgttgcccataacaacgcttacatcactgagctcctggca
cgctccgcccctatccacacaacctga
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