Oncorhynchus masou masou (cherry salmon): 135524355
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Entry
135524355 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
Ribosome biogenesis [BR:
omm03009
]
Eukaryotic type
90S particles
Other 90S particles
135524355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135524355
NCBI-ProteinID:
XP_064807890
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Position
4:15039128..15060499
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AA seq
1811 aa
AA seq
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MASTEEDFPRGGKTKQTTESKAEPVRRHTEVDNLFETHTAEESKKRKGQKEGALKKAKRQ
RTSKEEALKLNTTTSVDILQLKSLKVGTLLLGCVKEVADFEVTVNLPSGLLGYLNISNIS
DSYTKILSDHLDSASSEEIFSLASLFSPGMLVRCVVTRLNTAKGGSVSIQLSINPKEVNK
GLSTGSLMAGLILSGCVESIEDHGYLVDLGIKGIKAFLPKQAAKDKTNSPKELKVGQYVT
SLLEEVKNDERVVRLSISPTAVAQAVADTAHGWTLTSLLPGLLVKAQIKKVTLHGLILEF
LSSFTGLVDFMHLEPEQASTFNEGDSVKACILYVEPSTRLVGLSLRSHLLQPGGVVDLVA
TERIGEVAHGCKMTALHHLSGAMLELPDQTVVFVHRNHMKEPKEAFNLNRVMAKPEHTCR
IMDFSPMEQVHLVSLRQSIVDAPFFRRYHDIQPGQIVQGTVMSLQNHGMMVKVTDYIRGL
VPRTHLSDIILKKPEKQYAVGMIIKCRVLSVDPQAKKLTLTRKRALIDSSLPPFLTYEDA
RRGRVSHGFIVCVKDFGCIVRFFGEVKGLVPTNELSTEPVVVPENLFYVGQVVKAKVLNC
DVEKEKLLLSFKAVAGGDTEGPPKPKFDFEVGKKVEVKVVSKFLTGLEVSILPEETPALL
PMMHLSDHVSNCLLLWEGLQEGDIISNILCLSKKKQTITLTKKPTLKSFLEEGGVVAKEF
SDITVGVQLIGWVNNVMPYGVFVEFPYGLVGLAPKAAMSDKFVGDTAAHFQLGHTVVAKV
TNLDEEKHRFLVSLKVSEVPSPERDGQARLIRGLQERKAVMEMMASRGDSDLLKQLSALT
IGQRMKMSVDEVREDGSVTFKSDELSAATVLATKDHAPGKLATGQECMPVILHVDLMTSE
VYVSLLAKLTGKRKAVETGSTHTATVHHADRDFAVISLGDTAQLTVIQTTNHLNETFRFD
AEKLTVGKTLAITVTKSSCEELEGLPLVSWDLAPPISKRLISNSKRSKGMYRYGDVVKGK
VKTVKPTCVLVTLEDGSTGCVHVSEIQEVVCVGTFPTSFLKIGSEVTARVIGGREGNSHR
FLPFSHPNFTYSMPELSLLPRNLKEDADVKPVKTKEKLKRYQVGDDVICFVSKYFPNRKC
LEVTTGPSVTGTVEQLAMTSDLKGAKHPEKLFKLGQAVSAKVVTVSFSKPSRLSLSLNGV
HKLEKGHVIMGLVQKLDPVLGLLVKLPFSAMGTVAMEDLADKYKPKPLERYSKDQLVRCC
IVGEAKSNWQLSLRSSRTNPEKASVVQDPEIVSLEDLSEGQIVRGYVRTVNAQGVFVSLS
RSIQGRAQFQKATKYFLASHQDYAKKVPQSTLLTTKILSIDKENGLVDLSLLQEDTGKPD
VLPESLGLNLRLTGEAKEKRDATKKRKHTESESKQGTAENVSTKKKKKTKKGKGEDSDSG
VEVYFREVEEENKLAPAEVEKPVPVQPARLQVTGGFSWDAALSALKPAPAALGGEDSSDG
EDGEGNTKPQKKSHHVQEVEKREAEKALTKLETELMDPGLRPQTAASFERLLLGSPDSSL
LWLQFMAFHLQATQIEQARXVAERALKTISFREEQEKLNVWVALLNLENLYGTEESLQKV
FERAVQYCEPMPVYQQLADIYAKCQKTKEAEGLYKTMVKRFRQEKAVWLSYGTFLLQQGQ
SDAASALLQRAIKSLPNKDNVDLIAKFAQLEFRYGDVERGKAMLDRILTSYPKRTDLWSV
FIDLMVKHGSQKEVRAVFDRVIHLSVAVKRIKFFFKRYLEYEKKSGTPESIQAVKDKALE
YVESKGTEASR
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacggaggaggacttccctcgtggaggtaaaaccaagcagaccactgaaagt
aaagcagaacctgtgagaaggcatacagaagtggacaatctgttcgagacacatacagca
gaggaatccaagaaaaggaagggacagaaagagggtgcgttgaagaaagctaagaggcaa
aggacgagcaaagaggaggcgctgaagctcaatacaacaacctctgtagatatcctacag
ttaaaaagcctgaaggtgggtaccctactgctgggctgtgtgaaggaggtggcagatttt
gaggtgacggttaacctgcccagcggccttctgggatacctgaacatttccaatatctcg
gactcgtacaccaagatactgagtgaccacctggattctgcttcttcagaggagatcttc
tcactcgccagtctcttctccccgggcatgctggtcaggtgtgtggtaaccaggttgaac
actgccaaaggaggatcggtcagcattcagctgtcaatcaaccccaaagaggtcaacaag
ggcttgagtactggctctctgatggctggcttgatcctgagtggttgtgtggagagtatt
gaggatcacggctacctggttgacctcggcatcaagggaatcaaggccttcctgcccaag
caggcagccaaagacaaaacgaatagtccaaaagagctgaaggtgggccagtatgtgact
tctctgttggaggaggtgaagaacgatgagcgcgtggtccgtctgtccatcagccccacg
gcggtggcccaggccgttgcagacacagcgcacggctggacccttaccagcctgctgcct
ggcctactggtcaaggcgcagatcaaaaaggtgaccctacatggtctgattctggagttc
ctctcctccttcaccggcctggtggactttatgcacctggaaccagaacaggcctccacg
ttcaacgagggagacagcgtgaaggcctgcatcctttatgtggagccgtccacccggctg
gtgggcctgtccctgcgcagccacctgctgcagccagggggcgtcgtggacctggtggcc
actgagaggataggggaggtggcgcatggctgcaagatgaccgctctccatcacctgtct
ggagccatgctggagctgcctgaccagactgtggtgtttgtacataggaaccacatgaag
gagcccaaggaggcgttcaacctgaaccgtgtcatggccaagcctgaacacacctgtagg
atcatggacttcagccccatggagcaggtgcacctggtcagcctgcgtcagagcatcgtt
gatgccccgttcttcagaagataccatgacatccaacctggacagattgttcagggcacg
gtgatgtccctccagaaccatggcatgatggtgaaggtgaccgactatatcagaggcctg
gttccccggacacacctctctgacatcatcctcaagaaaccagagaagcagtacgcagtg
ggcatgatcatcaagtgccgggtgttgtcggtggacccacaggcgaagaagctgacccta
accaggaaaagggccctgatagattcctccctccccccgttcctgacctacgaagatgcc
cgccgcggtcgcgtctcccacgggttcatcgtctgtgtcaaggactttggctgcatcgtc
cgtttcttcggcgaagtcaaggggctggtgcccaccaacgagctcagcacggagccagtg
gtagttcctgagaacttgttctacgtcggacaggtggtgaaggctaaagtgctgaactgt
gacgtggagaaggagaagctccttctttccttcaaggcagtggcaggaggagacactgag
ggaccgcctaaacccaagtttgactttgaggttgggaagaaagtggaggttaaggtggtg
agtaaattccttaccggtctggaggtgtccattctgccagaggagacccccgccttgcta
cccatgatgcacctctccgaccacgtgtccaactgtctactgctgtgggaagggctgcaa
gagggtgacatcatctccaacattctctgcctcagcaagaagaaacagactattaccctg
actaaaaagcccactctgaagtcattcctggaggaggggggcgtggtggctaaggagttc
tctgacatcacagttggggtgcagctgattggctgggtcaataacgtcatgccctatgga
gtgtttgtggagttcccctatggcctggttggcctggcccctaaagcggccatgagtgac
aagttcgtcggcgacactgcggctcacttccagctgggccatacggtggttgccaaggtg
accaacttggacgaggagaagcacaggttcctggtcagtctcaaggtatcagaggtcccc
tcccctgagagagacggccaggccaggctgatccgaggcctgcaggagaggaaggcggtg
atggagatgatggccagcagaggtgactctgacctactcaaacagctgtctgcgctgacc
ataggccagaggatgaagatgagcgtagacgaggtgagggaggatgggagtgtcaccttc
aagtcagacgaactcagcgcagccaccgtactggccaccaaggaccatgcgccgggtaag
ttggcgacgggacaggagtgcatgccggtaatcctccacgttgacctcatgacctctgaa
gtctacgtgtccctcttggctaaactgaccggcaagaggaaagcggtggagacagggtcc
acacacactgccactgtgcatcacgccgaccgcgactttgccgtcatctcattgggcgac
acggcccaactgacggtcatccaaaccaccaatcacctcaacgaaacgttccgcttcgac
gctgagaaactgaccgtcggtaaaaccctggcgatcaccgtcaccaaatccagctgcgag
gaactagaagggctccccctagtgtcctgggatctcgccccgcccataagcaaaagatta
atctccaactccaagaggtcgaaaggcatgtatcgctacggcgacgtggtcaaggggaag
gtgaagacagtgaagcctacgtgtgtgctggtgacgctagaggacgggagcacggggtgc
gtgcacgtgtccgagatacaggaagtggtgtgcgtgggaacgttccccacgtccttcctc
aagataggaagtgaggtcacagcccgggtcattggaggacgggagggcaacagtcacagg
ttcttgccgttctcccatcccaacttcacttactccatgcctgaactctcacttcttccc
aggaacctgaaagaagacgcagatgttaagcctgtcaagaccaaagagaagctgaagcgt
tatcaggtcggcgacgacgtcatttgctttgtgtcaaagtactttccaaataggaagtgt
ctagaagtgactactggtccctcagtaactggaactgttgaacaactggccatgacctct
gaccttaaaggtgccaaacacccagagaagctgttcaagctgggccaggcggtcagtgct
aaggtggtgacagtcagcttctccaagccctcacgcctctcattgtctctcaatggtgta
cacaagttggagaagggccatgtaatcatggggttggtgcagaagctagatccagtcctg
ggtctgctggtgaagctgccgttcagcgccatgggaacggttgccatggaggacctggcc
gacaaatataagccaaaacctctggagcggtacagcaaggaccagctggtcaggtgctgc
attgtaggagaggcaaagagcaattggcagttgtccctccgctcttcgaggacgaaccca
gagaaggcctcggtagtacaggacccagagattgtgtctctcgaagacctgtcagagggg
cagatcgtcagaggctatgtgaggactgtcaatgcacagggagtctttgttagtttgtct
agatccatacagggcagagcccagttccagaaggccacgaagtactttttggctagccac
caagactatgccaagaaagtaccacagtccacactgctcaccaccaagatcctcagcatc
gacaaagaaaacgggctggtggatctgtctctgctccaagaggacactgggaaaccagac
gtgctcccagaatccctggggctgaacctgcgcctgacaggagaggccaaggagaagcgt
gacgccaccaagaagaggaaacacacggagtcggagagcaagcagggaaccgcagagaat
gtttcaacgaagaagaagaagaagacgaagaaggggaaaggagaggacagtgacagcgga
gtggaggtgtacttcagagaagtagaggaggaaaataagttggcgcctgcggaggtagag
aagcccgtccccgtgcagccggccagactgcaggtgaccggagggttctcctgggatgca
gcgctgagcgccctgaaaccagcgcccgctgccctggggggagaggactccagcgacggg
gaggacggcgaggggaacactaagccccagaagaagtctcaccatgtgcaggaggtggag
aagcgggaggctgagaaggccctgaccaagctggagacggagctgatggacccaggcctg
cgaccccagacggcggctagctttgagcgcctgctactcggctcccctgacagctctctg
ctctggctgcaattcatggccttccacctgcaggccacacagatagaacaggctcgangg
gtggctgagagggctctgaagaccatctccttcagagaagagcaggagaagctgaatgtg
tgggtggctctgttgaacctggagaacctgtatgggacagaggagagtcttcagaaggtg
tttgagcgagccgtccagtattgtgaacccatgcccgtctaccagcagctggctgacatc
tacgccaagtgtcagaagactaaggaggcggaaggtctgtacaagaccatggtgaagcgg
ttccgtcaggagaaggctgtgtggctgagctacgggaccttcctgcttcagcagggtcag
agtgacgcggccagcgccctgctacagagggccatcaagagcctgccgaacaaagacaat
gtggatctgatagcgaagtttgcccaactggagttccgctacggagacgtagagcgagga
aaggccatgttggacaggatcctgaccagctaccccaaacgcaccgacctgtggtccgtc
ttcatagacctcatggtcaaacacggctcccagaaggaagtccgggctgtgtttgaccgt
gtgatccacctgagtgtggcggtgaagaggatcaagttcttcttcaagcgttacctggag
tatgagaagaagagcggcacgccagagagcatccaggctgtcaaggacaaggctctggag
tacgtggagtctaaaggaacagaggcctccagatag
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