Oncorhynchus masou masou (cherry salmon): 135524376
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Entry
135524376 CDS
T10723
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135524376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135524376
03036 Chromosome and associated proteins [BR:
omm03036
]
135524376
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
135524376
Coactivators
SAGA/TFTC/STAGA complex
135524376
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
135524376
STAGA complex
135524376
TFTC complex
135524376
SAGA complex
135524376
SLIK complex
135524376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_Nup120_160
DUF4431
PROPPIN
LisH_TPL
RAB3GAP2_N
VPS8_N
Motif
Other DBs
NCBI-GeneID:
135524376
NCBI-ProteinID:
XP_064807921
LinkDB
All DBs
Position
4:15030363..15037607
Genome browser
AA seq
749 aa
AA seq
DB search
MAAVQDGQLNLEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADADDSPVSESAGAGSGGVPSVGADGGDANSLLSRV
SIVTPIAPPATAPPKVVAASGGEDQPDVNVVLSAYSQQGDPVLYPLYYNGLKKFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILSSMSKKEH
MKGNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTLFHPNSNYMATGSADRT
IRLWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDGRVLLWDVGHGLMVGELKGH
TDTIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLL
GTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggtcagctcaatctggaggtcgaaaaagacataaaaacagaa
ataacaaacgatgggtctggaaacatcaatgcaaactcttcgtcacccggttctacgtct
tcgggcggtaaatcgaaatctcctgcgggatcgggtgaagatcaacagacactgctcgcg
gtgttgcaatttctcaagaggaataaattgacagagtcggtcgacattttgcggcgagaa
gcgggcttatctgcagatgcagatgattccccggtatccgagtcggcgggagctggatcg
ggtggcgtcccaagtgtcggtgctgatgggggggatgccaactctctcctcagccgagtg
tcaatcgtcacccccatcgcacccccggccacggcacccccaaaagtggtggcagcatca
ggtggggaagaccaaccagacgtcaacgttgtcttgtcggcctacagccagcagggggac
cctgtcctctacccactctactataacggcctgaagaagtttattgagtctgtcctggac
tgccacagagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggag
ctggtctacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggtgac
caggagtgttactacgaggaggacctccgcatcctctccagcatgtccaagaaggaacac
atgaagggaaacgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcc
cgagactcctaccagcttttgaagaggcacctgcaggaacgtcagaacaaccagatctgg
aatattatacaggaacatctctatattgatatctttgacgggatgcctcggagtaaaagt
cagattgatgccatgtcgggcagtctggctggggagggcaagagagatgccaacaaagcc
aaggtgttctatggtcttctgaaggagccagagattgaggtacctctggacgatgaggat
gaggaggcagagaacgaggagggcaaacccaagaagaagaaaccgaagaaggacagcatg
ggctccaagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctcccc
gagctgaaggactctgacaagctggacaagatcatgaacatgaaggaggccacgaagaag
attcgtctgggcccagacaacctaccctccatctgtttctactccttcctcaacgcttac
cagggtctgacagcggtggacttcacagatgactccagtctgatcgcggggggcttcgct
gactccaccgttagggtgtggagcgtcacacccaagaaactacgccgggtcaaatctgca
gcagatctgagtaatattgataaagagtctgatgacgtgttggagaggatcatggatgag
aagacggccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagc
ttcagccctgacaggaactacctgttgtccagttctgaggacggtacggtcagactgtgg
agtctgcagacgttcacctgtctggtggggtataaaggacacaactaccctgtctgggac
actcagttctcaccctatggttactactttatctctgggggacatgaccgagtcgctcgt
ctgtgggcgactgaccactaccagcccctgcgtatgttcgctggtcacctggctgacatc
acgtgcaccctcttccacccgaactccaactacatggccacgggttcagctgaccgtacc
atccgcctctgggacgtcctgactggaaactgtgtccgcatcctcacgggtcacaagggc
cccattcattccctggccttctcccccaatgggaagttcatggcctcgggagcaactgac
gggagggttctactgtgggacgttggtcacggcctgatggtcggagagctgaagggacat
actgacaccatctacgccctcaagttcagcagggacggagagatactagcctcaggctca
atggataacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggat
gacttcaccgcagcaacaggtcacatccatctaccagagaactcccaggagctgttgcta
ggcacctacatgaccaagtccacccctgtcattcacctgcacttcacccgcaggaaccta
ctgctggctgcaggggcctacaacccatga
DBGET
integrated database retrieval system
