Oncorhynchus masou masou (cherry salmon): 135524659
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Entry
135524659 CDS
T10723
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135524659
03015 mRNA surveillance pathway
135524659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135524659
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135524659
5.6.2.5 RNA 5'-3' helicase
135524659
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135524659
mRNA cycle factors
Common to processing body (P body) and stress granule
135524659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
ATPase
SLFN-g3_helicase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
UvrD_C_2
AAA_16
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
135524659
NCBI-ProteinID:
XP_064808460
LinkDB
All DBs
Position
31:86131294..86151834
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AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYIKDLPLHACSYCGIHDPASVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGELAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNAINPGARFMSTAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGAGPA
HMAAMNMPIPFNLVIPPMPPPGYLAQANGPAAGRGGVLKGKAGRGGRQRTRGMGNHSGSG
QSNGPNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttctcaaacgctcaccttcctggacacggaggaa
gcggagctacttggggctgatacccagggctcggagtacgagtttaccgattttactctc
cccagccagacgcaaactcaaggccaaacccagagtcagctggacaatcaggtgaatggt
cctgatgaagggcttcacaatggaggagtcgatgatgtggccaaggcgagccaactcctt
gctgagttgaacttcgaggaggatgaagaagacacctattacatcaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcatctgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatagtgaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagatgggccactgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccccgccaag
gccgactcggtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaag
gacatcaactgggacagctcccagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtgaagatcccctcagagcaggagcaactccgggcccgccagatcacagcccag
cagatcaacaagctggaggagctctggaaggataatcccacggccactctggaggacctg
gagaagccgggcgtagacgaggagccccagcatgtgctgctgcgctatgaggatgcctac
cagtaccaaaacatcttcggccccctcgtcaagctggaagctgattacgacaaaaagctt
aaagagtcccagacccaagataatataacagtcaggtgggacctggggctaaataaaaag
cggattgcctatttctccttgcccaagacggattcaggtgacatgcggctgatgcaagga
gatgagatatgtctgcgctacaaaggagagctggccccactctggaagggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgttggagctcctgtggaaatacctcacaacttccaggtggattttgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acgtccgtgtcaggctacatctaccacaagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagttgcccaaacgcttcactgcacagggcctgcctgacctcaatcactct
caggtgtatgctgtgaagactgtgctgcagagacccctcagtcttatccaaggccccccc
ggcactgggaaaacggtcacctctgccaccatagtgtaccacctcgccaggcagggcaat
gggcccgtactggtgtgtgctcccagtaacatcgcagtggaccagctgactgagaagatc
cacatgtctggcctgaaggtggtcaggctgtgtgctaaaagcagagaagccattgactcc
cctgtctccttcctggcactgcacaaccagatccgcaacatggacagtatgccagagctc
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtccgctgacgagaagcgc
taccgggccctgaagcgcaccgctgagagagagctgctcatgaatgcagatgtgatctgc
tgtacctgtgtgggggcaggagacccccgtctggccaagatgcagttccgctccatccta
atcgatgagagcacccaggccaccgagccagagtgcatggtgcccgtagtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgcaagaag
gcagccaaagcaggcctgtcccagtctttgtttgagcgtctggtggtgctgggcatcagg
cccattcgtctgcaggtgcagtaccgcatgcacccggccctcagtgctttcccctccaac
atcttctacgagggctccctgcagaacggagtcactgctgctgaccgcatcaagaaaggc
tttgacttccagtggccacagccagacaaacccatgttcttctatgtgactcaaggccag
gaagaaatcgctagctctggaacatcctacctgaacagaactgaggcagctaatgtggag
aagatcaccaccaggctgctgaaggctggagccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagtttagtggctccctccac
accaagctctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaag
gacttcatcatcctgtcatgcgtccgagccaacgagcaccagggcatcggcttcctcaac
gacccgcgccgtctcaacgtggccctcaccagagccaagtatggggtgataattgtgggc
aaccccaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaaggag
cagaaagttctggtggagggacccctcaacaacctgcgagagagcttgatgcagttcagc
aagccccgcaagctggtcaacgccattaaccctggagcccggttcatgagcactgccatg
tatgacgcccgcgaggctctcatccctgggtctgcctacgatcgcagcagcgcagggcgt
ccatccaacatgtacttccaaacccacgaccagatcggcatgattggggccgggccagcc
cacatggcagccatgaacatgcccattccattcaacttggtgatacctcccatgcctcca
ccaggctacctggcccaggctaacggcccagctgcaggccgtggtggggtgctgaagggc
aaagcggggcgtggcgggcgccagaggacccgcggaatggggaaccacagtggcagtggg
caaagcaatgggccaaacagccaggccagccaggacgtgtcttcccagcccttctcccag
gggccactcacccagggctacatcaccatgagccagccctcacagatgagccaacctggc
ctctcccagcctgaactgtcccaggacagttatctaggcgatgagttcaagtcccagatc
gacgtggctctgtcgcaggactcgacttaccagggtgaacgtgcataccaacatggtggg
gtgactggactgtcacagtactaa
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