Oncorhynchus masou masou (cherry salmon): 135524814
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Entry
135524814 CDS
T10723
Symbol
smx5
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135524814 (smx5)
09123 Folding, sorting and degradation
03018 RNA degradation
135524814 (smx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135524814 (smx5)
03041 Spliceosome [BR:
omm03041
]
135524814 (smx5)
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135524814 (smx5)
mRNA degradation factors
5'-3' decay
Lsm complex
135524814 (smx5)
Spliceosome [BR:
omm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
135524814 (smx5)
Complex C
U2 snRNP components
135524814 (smx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
135524814
NCBI-ProteinID:
XP_064808733
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All DBs
Position
31:complement(99911857..99929664)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcctttttcaagtccctggtggggaaggacgtggtggtggagctcaaa
aatgacttgagcatctgtggaacacttcactctgttgatcagtacctgaacattaaactg
acggacatcagtgtcacggatccagagaagtatccacatatgttatcagtgaagaactgt
tttatccgaggctctgtggtgcgatacgtccaactgcctgcagatgaggttgacactcag
ctgttacaggacgctgctcgcaaggaggcactgcagcagaagcaatga
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