Oncorhynchus masou masou (cherry salmon): 135526001
Help
Entry
135526001 CDS
T10723
Name
(RefSeq) SR-related and CTD-associated factor 8-like isoform X1
KO
K13191
RNA-binding protein 16
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135526001
03041 Spliceosome [BR:
omm03041
]
135526001
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135526001
Spliceosome [BR:
omm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
135526001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
CDC45
DUF3525
Motif
Other DBs
NCBI-GeneID:
135526001
NCBI-ProteinID:
XP_064810078
LinkDB
All DBs
Position
32:34357831..34398759
Genome browser
AA seq
1521 aa
AA seq
DB search
MEAVKAFNGELFSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQGVEKFVQKCKPEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAAVNTPGTPATPATPANIVSSLPDWASQF
SNTDTVAAVAQILQSPHGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQLTA
AATANPMQLNPLEQRISSFNKKMLGHFDFGNDSERSEDTKKDAQSSQMPMVSDSIFHQLA
EQLQQQNLEHFQKQLMEHQQKSMNMEGQDGIFGSENTAMPQQSSNQSQHPAPQNKTDDSI
DNQQQDMDLDDGPEMEEERFEPEDKKSKTVDTRSRTRSRSRSRSPRKRRSRSRSGSRKRK
HRKRSRSRSRERKRKSSRSYSSERQEAREREKERQKKGLPPIRSRFLSVCSTTLWVGQVD
KKASPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYCARQKLSTGSFKVVSKIIK
IAWALNKGVKQEYKQFWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNA
PEPMKEAVSQAVSVEPMTATNTQQTQQEAFSQQEAFSQQEAFSQQVSMMPVQLPVAQAVP
AVGLVPPSFPVSMAMPPPGYGPLPPFLRAGFNASQPPPGFMQTAGVPQQAGMGSAPISLV
PASMSQAQDSMKDSPYGATIPGSFMPSALPGQGVFNQLQPGVQTQQAANDKMGQSADGMD
AAAELVLQGMQNAMSRGMGLLGMHPSASLTHPLHQQGLPGQRMSGLMPLDLRPTMLQGAG
ARFPLLMQQGLSQQSLLEASLHAQARARAASQMERFNRAEEAFNRGPNPPNESMSKAEEE
PSSGADDSQQGGDQDYRFPPPQEKQSTGLLRTPPLEHRESMGGGAGGGGLGGGRPALLQT
PVREPARDSVAGRLQALAGFTPQTSSRWGPLRGDFDERDMRSSPAAVSKGFQEARPGSNQ
GQNFPNRFENQNRAGSVGGVGGGVCTGGVGGGPAWSRGGVDAAVQFTDADMPQDLDECRR
PWDRQQRDRDFDFRKEMNGNRRERDSREKERDRERERDRGRERGNREREQERDREREREK
EREKDRERERERNKRGAWTPLLPLPQPLLPTPTLTPNLSLTQGKPQALLQLQSKLQPKPG
LLTKPGLLQTPTLLTRSTSHVPTKSLLQAPSQSLLQAPSQSLLQAPSQSLLQAPSQSLLQ
APSQSLIQAPSQSPPLTSHQSSQSPPKAPPQFTQFPTQAKNEARPSPKPQAEFHSSPQTH
VSPKSESSPQTQSFPQNLSPPQNQASLQAQLLHPAHSPFQTKSPPQGQSSSRAQSPPHAL
SPQAPRTPEEITDTQGEPEKPRWANVSGKPQEEPMKEPEPMVEPPSRWVNGTGSRMDTDA
VAEPTTTPSPNLALSMSLVLTHSPVEPQCLPEPLDQQHPSQHVASCSSTKDVDNGLSEPM
EEAEKQPVVEKTDTEGTIITQ
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtcaaagcattcaacggcgagctcttctcgttgaatgagtacaagcctcca
atctccaaggcaaaaatgactaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagggcgtggaaaaatttgtccagaaatgcaagccagagtataaggtc
ccaggcctgtatgtcatggactccatcgtgcggcagtcacggcaccagtttggccaggac
aaggatgtgtttgccccgcgcttcagcaaaaacatcatcggaaccttccaacatctctac
cgctgcccctcagatgacaagagtaagattgtcagggtcctcaacctctggcagaagaac
gccgtcttcaagagtgacatcatccagccgttgctcgacatggctgcaggacttccccct
cccagtgtcaccccagtcatgaccagccgcgatgctgcagtcaacacgcctggtacacca
gcgacccccgccaccccagccaacatcgtatccagtctgcctgactgggcgtcacagttc
tccaacacagacactgtagctgctgtggcccagatcctgcagagtccacacggccaacag
ctccagcagctggtgcagagcctgcaaatgcagcagcagaagccccagccatctctgctt
caggcgttggatgcaggactggtggtccagttgcaggccctgacggcccagctcactgca
gccgccacggccaaccccatgcagctcaaccccctggagcagaggatctcctccttcaac
aagaaaatgttgggccattttgactttgggaacgattcagaacgctctgaagacaccaaa
aaggacgcccaatcatcccagatgcccatggtgtctgactccatcttccaccagctggct
gagcagctgcagcagcagaacctggagcacttccagaagcagctcatggagcaccagcag
aagtccatgaacatggaagggcaggatggaatatttgggtctgagaacacggccatgccc
caacagagcagcaaccaatcacagcacccggcgccgcaaaacaagacggacgactcaatt
gacaaccagcagcaggacatggacctggatgacgggccagagatggaggaagagcgcttc
gaaccagaggacaagaagtccaagacggtcgacactcggtcaagaacacgttctaggtca
cgatcaagatctcccaggaagagacggtccagatcacggtcaggctctcggaaacggaaa
caccgtaagcggtcgcggtcacgctccagagagcggaagaggaagtcgtcgcggtcctac
tccagcgagagacaagaagcccgtgagcgagagaaagagcgccagaagaagggactgcct
cccatccgatccaggtttctcagtgtgtgcagcaccactctgtgggtgggacaggtggac
aagaaggccagtccgcaggacctcaccaacctgtttgaagagtttggtcagattgagtcg
atcaatatgatccctcctcgtggctgtgcctacatctgtatggtccacagacaggatgcc
tactgcgccagacagaaactcagcactggttcattcaaggtcgtctccaagattatcaag
attgcgtgggcgctgaataagggagtgaagcaggagtataagcagttctgggacatggac
ctgggggtcacctacatcccctgggagaaggtcaagttggacgacctggacggctttgct
gagggaggcatgatcgaccaggagactgtcaacgccgagtgggaagcagccaagaatgca
ccagagccaatgaaggaagctgtgagccaggctgtgagcgttgaacccatgacagccacc
aacacccaacagacccaacaggaggctttcagccaacaggaggctttcagtcagcaggag
gccttcagccaacaggtctccatgatgcctgtacagctccctgtggctcaggctgtccct
gccgtgggtcttgtgcctccatccttccctgtttccatggcgatgcccccgccaggctat
ggccccctgccccccttcctcagagcgggtttcaacgcctcccagccccctccaggtttc
atgcagacagcaggtgttcctcagcaagcaggcatgggctcagctcctatatctctggtg
ccggcctccatgtcgcaggctcaggacagcatgaaggactccccatacggagctactatc
ccggggagcttcatgccctctgccctccctggacaaggggtcttcaaccagcttcaacct
ggagtccagacgcagcaagcagccaatgacaagatgggccaatctgctgacggcatggat
gcagctgcagagttagtactgcaaggtatgcagaatgcaatgagtcgtggtatgggtctt
ctggggatgcacccctcagcttcccttacccaccccctgcaccagcagggcctgcctggc
cagaggatgtctgggctgatgccgctggacctccggcctactatgctccagggtgccggt
gcccggttccccctcctgatgcagcagggcctgtcccaacagagcctcctggaagcgtcc
ctccatgcccaggcacgcgccagggcggcctcccagatggaacgcttcaacagggccgag
gaggccttcaaccgggggcccaaccccccaaacgaaagcatgtccaaggctgaggaggag
ccttcctctggagctgacgatagccagcagggaggggaccaagactaccgcttccctccg
ccccaggagaagcagagcacaggcctactgaggacccctcccctggagcacagagagtcc
atgggtggaggagctggtggtgggggtttgggcggaggcagacctgccctgctccagacc
ccagtgagagagccagctagagacagcgtggcagggcggcttcaggcccttgccggcttc
actccccagacctccagtcgctgggggccactcagaggggactttgatgagcgtgacatg
cggagctctccggccgcggtctccaagggcttccaggaagcgcgccctggctctaaccaa
gggcagaactttcccaaccgctttgagaaccagaaccgcgctggatcagtaggaggggta
ggaggaggagtatgtactggtggtgttggagggggcccggcgtggagtcgtggtggagtt
gatgctgcagtacagttcactgatgctgacatgccccaggacttggatgagtgccggcgc
ccttgggacaggcagcaacgggacagggactttgacttcaggaaggagatgaatggcaac
cggcgtgagagagacagccgtgagaaggagagggaccgcgagagagaaagggaccgtggc
cgtgagcgtggcaaccgtgaacgagagcaggagcgtgaccgggagagagagcgtgaaaag
gagagggagaaggatcgggaacgtgagagggaacgtaacaagcgtggagcctggacaccc
cttcttcctctaccacaacccctgctccctactcctaccctgaccccaaacctctccctg
actcaaggcaaacctcaggccctgctgcaactacagtccaagcttcaacctaaacctgga
ctcctaactaaaccgggtctgcttcaaactccaactctcctaactcggtcaacatctcat
gtcccaaccaagtctcttcttcaagccccatcccagtctcttcttcaagctccatcccag
tctcttcttcaagccccatcccagtctcttcttcaagccccatcccagtctcttcttcaa
gccccatcccagtctcttattcaagctccatcccagtctccacctctaacctctcaccag
tcatcccagtctccacctaaagctccaccccagttcacccagtttccaactcaagccaag
aatgaagctcgccccagtcctaagccccaggcagagttccattcctctccccagacacat
gtgtcccccaagtctgagtcctcaccccagacccaatcctttcctcagaacctgtcacca
ccccaaaaccaggcttcccttcaggcccagttgctgcaccctgctcattcccctttccag
acaaagtcccctccccagggccagtcatcatcacgtgcacagtccccaccccatgccttg
tccccacaggccccccgcaccccagaggagatcactgacacccagggggagccagagaag
ccccggtgggccaacgtgtcagggaaacctcaggaagaacctatgaaagaacctgaaccc
atggtagaacctccatctcggtgggtcaatggaacagggtcgaggatggacactgacgca
gtggctgagcccaccactaccccgtcccccaatcttgccctctcaatgtcactggtcctc
acacacagccccgtggagccccaatgcctgccggagcccctggatcagcagcatccctcg
cagcatgtcgcctcttgctcctccacaaaggatgtagacaatggactgagtgagccgatg
gaggaagctgagaaacagccagtggtagagaaaacagacactgaggggacaatcatcact
cagtag
DBGET
integrated database retrieval system
