Oncorhynchus masou masou (cherry salmon): 135526229
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Entry
135526229 CDS
T10723
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like isoform X1
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135526229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135526229
Spliceosome [BR:
omm03041
]
Complex B
Other components
Prp19-related factors
135526229
Complex C
135526229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
RRM_occluded
zf-CCCH_2
Nup35_RRM_2
zf-CCCH
zf-CCCH_4
RRM_YTH1
zf-CCCH_10
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
135526229
NCBI-ProteinID:
XP_064810476
LinkDB
All DBs
Position
32:complement(55357850..55377902)
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AA seq
360 aa
AA seq
DB search
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMSKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLDIKDDVPKSDVNKEYYTQN
AEREIGNSDGTRPVGLLGKAPSSSEMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKTITTLYVGGMG
DTISDAELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIINGRRLTV
KWGRSQAARGKEAYQDGVSEMGTRLDPVPGLPGALPHPLLWKKTLPLTTSIWTLVHLLMS
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccctaggagctaacacatacaacagacagaattgggaagacgcggatttc
ccaattctgtgtcagacatgtttgggggaaaatccatacatccgcatgagcaaagaaaag
tatgggaaagaatgcaagatctgtgctcgtcccttcactgtgttccgctggtgtccagga
acaaggatgcgcttcaagaagacagaggtgtgtcagacctgcagcaagatgaagaacgtc
tgtcagacctgtctgcttgacctggagtacggtttgccaatccaggtcagggacaccggg
ctggacatcaaggatgacgtgccgaagtcagacgtgaacaaggagtactacacacagaat
gctgagagagagatagggaactctgatgggacacggccagtgggtctgctgggtaaggcc
cccagctccagtgagatgctgctgaagctggcccgcacgacaccctactacaagaggaac
agaccccacatctgctccttctgggtgaagggagagtgtaagagaggagaggagtgtcct
tataggcacgagaagcccacagacccagatgatcccctggcagaccagaacattaaggac
cgttactatggtattaatgacccagtggctgacaagctgctgaaacgggcctccaccatg
cccagactggacacgcctgaggacaagaccatcaccacactctatgtaggggggatggga
gataccatctcagatgcagagctgaggaatcacttctatcagtttggggagatccggacc
accaccattgtccagaggcagcagtgtgccttcatccagtttgccacacggcaggcagct
gagcttgctgcagaaaagtcattcaacaagctcatcatcaacggacgcaggctcaccgtc
aagtggggcaggtctcaggcagccagaggaaaggaggcctatcaggatggggtcagtgag
atgggaaccagattagaccctgtgccaggactgcctggagctctcccccaccccctgctc
tggaagaagacgctcccactaactacttcaatctggaccctggtacatctcctaatgtca
tga
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