Oncorhynchus masou masou (cherry salmon): 135526298
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Entry
135526298 CDS
T10723
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
omm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135526298
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
135526298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135526298
04121 Ubiquitin system [BR:
omm04121
]
135526298
03400 DNA repair and recombination proteins [BR:
omm03400
]
135526298
Enzymes [BR:
omm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135526298
Spliceosome [BR:
omm03041
]
Complex B
Other components
Prp19 complex
135526298
Complex C
Prp19-CDC5 complex
135526298
Ubiquitin system [BR:
omm04121
]
Ubiquitin ligases (E3)
U-box type E3
135526298
DNA repair and recombination proteins [BR:
omm03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
135526298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Prp19
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_SPT8
U-box
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_ACSF4
Beta-prop_Nup120_160
PROPPIN
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
eIF2A
B-prop_COPA_B_2nd
RMC1_N
Cytochrom_D1
Beta-prop_LRRK2
Tricorn_2nd
Nucleoporin_N
zf-Nse
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
135526298
NCBI-ProteinID:
XP_064810622
LinkDB
All DBs
Position
32:complement(57827777..57832477)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGVDPMNSQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQSMPASQPAAGGAGGEPMEVSVQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILCMDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCI
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGQVLTKVTDEAAGVALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GLAFGDNAQFLSSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgcgcaatttccaatgaggtccccgagcacccttgcgtgtccccggtg
tctaaccaggtgttcgagcgccgactgatcgagaagtatattgcagagaatggagtagat
cccatgaatagccaaccactgtcggaagagcaacttatcgatataaaagtgtctcatcct
atccgaccaaaggctccctcttctaccagtatccctgccatactcaaggctctgcaagat
gagtgggatgcggtcatgttgcacagtttcactctgaggcagcagctgcagacgactcgc
caggagctctctcacgccctctaccagcatgacgcagcctgcagagtcattgctcgtctt
accaaggaggtcactgcagccagagaggccctggccacactcaagccccaagccggattg
gtggctcctcagtctatgcctgcctctcagccagccgctggaggtgctggtggggaacca
atggaggttagtgtgcaggtgggaatgactccagagatcatccagaagcttcaagataag
gctactgtccttaccacagagagaaagaagagaggaaagaccgtgccagaggagctggtc
agggctgaggatctgagcaagtaccgccaagtggcttcccacgctggacttcacagtgcc
agtgtcccaggaatcctgtgtatggacctctgtccttcagacaccaacaaagtactcact
ggtggggctgataagaatgttgtggtatttgataagaaggaggagcagatcattgccact
ctcaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtctgtggtg
ttctctgcctctccagacagcaccatccgggtgtggtctgtgactgggggcaactgtatc
caggtggtgcgagctcacgaggcaagtgtgaccgggctgtcacttcacgcaactggggac
taccttctcagctcttccgaagaccagtactgggccttctcggatatccaaactggccaa
gtccttaccaaagtcacagatgaggctgctggtgttgctctgacttgtgctcagttccac
cccgacggtctgatcttcgggacgggaaccgcagactctcagatcaagatttgggatctg
aaggagcgcacaaacgtggccaacttccctggccactctggccctgtcacctctatcgcc
ttctctgagaacggatactacctggctacaggtgcccaggacagctctgtgaagctgtgg
gatctgaggaaactgaagaacttcaagaccatcgccctggacaacaactatgaggttaag
tctctggtgtttgatcagagtggtacatacttggctgtgggtggatccgacatcagggtg
tacatctgcaagcagtggtcggaggtcctcaacttcagcgaccattctggcctagtgaca
gggctggcattcggagacaatgctcaattcctttcctccgctggaatggacagaagcctc
aagttctacagcctgtag
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