Oncorhynchus masou masou (cherry salmon): 135526583
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Entry
135526583 CDS
T10723
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
135526583
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
omm01009
]
135526583
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omm04515
]
135526583
Protein phosphatases and associated proteins [BR:
omm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135526583
Cell adhesion molecules [BR:
omm04515
]
Cadherins
Protocadherins
135526583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
SGBP_BT4661-like
PDGLE
Syndecan
Fibulin_C
NnrU
Motif
Other DBs
NCBI-GeneID:
135526583
NCBI-ProteinID:
XP_064811157
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Position
32:complement(75358184..75788204)
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AA seq
1256 aa
AA seq
DB search
MADTLMSRAEGILRVVSSSSFIRCVLLRMLRSAQSCLIESPMRFQSSGVMVLRWDGTLVL
AAMLLVYCTADPTDILYRMLEEQPPNTLIGSLASDEGLPDSGHLYKLEVGTPYLRVDGKT
GDIYTTEVPIDRETLRDCRNLFEGDKCFLEFEVSITDLKQGQGPRLIEGRIEVQDVNDNT
PQFTSPILMLSIPENTHIGALFSIPMASDKDSGHNGVAEYSLSAGTDADQLFSLQVAEDT
DEKQPQLIVMGNLDREQKDSYDLNIRVVDGGTPPRASSALLRVTVTDQNDNAPKFERSHY
EAELAENSPVGHSVLQVKANDADMGTNGEIDYSLHQASDAVQRLLRIDRSTGIIYVKGLV
DREEESFLKFFVVAKDRGPNSKSSKVLVTINVKDQNDNAPAIEIRGIGLVTHHDGVANIS
EDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASESANDRKRKYFLQTTTLLD
YERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNAPVFSPTLFEVDFAEENQPGDKV
LDVVATDADSGSNAELTYSIIMDSATKGLFEIDPKTGEVHVRNTLDREHREQYEFHVAAA
DKGSPSLRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVIDADKGENA
MVRLSVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLRAVDAGDPPRSSYVGVTINV
LDENDNSPYVTKPSNSSYKYLPPLTTPETRVEVVEAEDIDTGPNSELVFSITGGNPYGLF
HISPNNGEITLAQEFTRKHNGLHRLVVKVSDKGKPPRHTTALVHIFVNETMGNITLIESL
VGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVILVIVVVVVIRHRMQKDTKSGY
QAGKKESKDLYAPKAGPKNGKGKKSKKGKVPKPTKPLEEDEEASLQKGLNFNLINDSVND
SPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQDLPATNTFVGTGD
NNSTGSDQYSDYSYKANPPKYSNKQLPHRRVTFSTANQAQDLQDPSQHSYYDSGLEESET
PSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGNCTHECTEYG
HSDACWMPGQPSPNRKSSTKNAPKLSTFVPYLESEGQDHLMANGSPKPMADERGSAGGGS
GGSKVANIRFLPPYSSAFSGGSDSGKGCEEIPLSQAAEYHSATTPTNQGSKREIYL
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atggcggatactttaatgtcacgcgcggaggggattctgcgggtcgtttcaagctcctcg
tttattcggtgtgttttactgcgtatgttaagatcagcacaatcttgcctcattgaatca
ccgatgcgtttccagtcaagcggagtgatggtgctgaggtgggatggcacgctggtgttg
gccgccatgcttctggtttactgtaccgccgatcccactgatattctctaccggatgctg
gaggagcagccgcccaacacgttgatcggcagcctggcatcggacgagggcctgcccgac
tcaggccacctgtacaagctggaggtgggcaccccttacctgcgcgtggacggcaagacg
ggagacatttacaccacagaggtccccatcgaccgtgagacactacgggactgccgcaac
ctgttcgagggcgacaagtgcttcctggagttcgaggtgtccatcacggacctgaagcag
ggccagggaccgcggctgattgagggccgcatcgaggtgcaggacgtcaatgacaacaca
ccccagttcacctcgcccatcctcatgctgtccatcccagagaacacacacatcggggca
ctcttctccatccccatggccagcgacaaggactcgggccacaacggcgtggccgagtac
tcgctcagcgccgggactgacgccgaccagctcttcagcctgcaggtggccgaggacaca
gacgagaagcagccgcagctcatcgtcatgggcaacctggaccgcgagcagaaagactcg
tacgatctcaacatccgtgtggtggacgggggcacaccaccacgagccagcagcgccctg
ctgagggtgaccgtcaccgaccagaacgacaacgcacccaagtttgagaggagccactat
gaggctgagctggctgagaacagccctgtgggacactcagtcttgcaggtgaaagccaac
gacgctgacatgggtaccaacggggagatcgactatagcctgcaccaggcctccgatgcc
gtccagaggttactacgcattgaccgctccacagggatcatctacgtcaaggggctggtg
gaccgagaggaggagagcttcctcaagttcttcgtggttgccaaggatcgcggccccaac
tccaagagctccaaagtcctggtgaccatcaacgtcaaggaccagaacgataacgcaccc
gccatcgagatccgtggcatcggcctggtcacccaccacgacggtgtggccaacatctca
gaggacatgcccatcggcacgcctgtagccctggtgcaggtgtcggatcgtgatgaaggg
gagaatgctgtggtcacctgtgtggtggccggggacgtccccttccagctgcggcccgcc
agcgagtcagccaacgaccgcaagaggaaatacttcctgcagaccacgaccctgcttgac
tacgagcgcatcaaggactacaggattgaaatagtagcggtggactccggtaaccctgca
ctgtctagcacaaactccctgaaggtgcaagtcaccgacatgaatgacaatgcccctgtc
ttctcccccaccctgtttgaggtggactttgcagaggagaatcagccaggtgataaggtc
ctggatgtggtggccacagacgcagacagtgggtctaacgcagagctgacctacagcatc
atcatggactcggccactaaggggctctttgagatcgaccccaaaacaggagaggtgcac
gtgaggaatacgctggaccgtgagcacagggagcagtacgagttccacgtggcggcagcc
gataagggctcgcctagcctgagggggacggccacggtggtggtcaaggtgctggaccgt
aacgacaacgaccccaagttcatgttgagcggctacagcttctccgtcttggagaacatg
cctccactcagccctgttggcatggtgacggtcatcgacgcagataagggcgagaacgcc
atggtgcgactctcggtggaacccgacaatggcaagtttgtcatccagaatggcacaggt
actatcctctccagcatatcctttgaccgtgagaaggagagcacatacactttccgcctc
agggctgtggacgccggtgaccctcccaggtcctcctacgtgggtgtgaccatcaacgtc
ttggacgagaacgataactccccctacgtcaccaagccctctaactcctcatacaagtac
ctcccacctctcacgacccccgagacacgcgttgaagtggtggaggccgaagacatcgac
acaggacccaactccgagctggtcttcagcattaccggtgggaacccctacggactgttt
cacatctcgcccaacaatggggagatcaccctggcccaggagttcacccgcaagcacaac
gggctccaccgtctggtggtgaaggtgagcgacaaaggcaagccaccacgccacaccacc
gccctggtccacatcttcgtcaatgagaccatgggcaacatcaccctgatcgagtctctg
gtgggtcacagcctctacactcctctggacagagacattgccggggaccccaactatgct
ctggcccagcgcagcaacatcctgtatggcagccttgcgggcatcgccggagtcatcctg
gtcatcgtggtggtggtggtgatccgtcatcgcatgcagaaggacaccaagagcggctac
caggcgggcaagaaggagagcaaggacctgtatgcccccaaagcagggcccaagaatggc
aagggcaaaaagagcaagaagggcaaggtgcccaagcccaccaagccactggaggaggac
gaagaggccagcctccagaagggcctcaacttcaacctcataaacgatagtgtcaatgac
agtccccggatccacctgcccctcaactaccccccgggcagccccgacctgggcagacac
taccgctccaactccccactgccctccatccagctgcagccccagtccccctctgcctcc
aagaagcaccaagccgttcaggacctgcccgccaccaacacctttgtgggcacaggtgac
aacaactctacaggctccgatcaatattcggattacagctacaaggcaaacccgccgaaa
tacagcaacaaacagctcccccatcgccgagtgaccttctccacggccaatcaggctcaa
gacctgcaggacccctcccagcacagctactacgacagcggattggaggaatcggagact
cccagctccaaatcgtcatcggggccccgcattgggcccctggccctgcctgaggaccac
tacgagaggaccaccccggacggcagtatcggagagatggagcacccggagaacgatctc
aggcctctgcctgatgtggccatgactgggaactgcacccatgagtgtaccgagtacggc
cactccgacgcctgctggatgcctggtcagccctcccccaatcgtaagagttccaccaag
aacgcccccaagctctccaccttcgtgccttacctggagagtgaggggcaggaccacctc
atggccaacggcagtcccaaacccatggcagacgagcgtgggagtgctggaggtggcagc
ggaggctccaaggtggctaacatccgcttcctgcccccttacagcagtgccttctccggg
ggcagcgactccggcaaaggctgcgaggagattcccctgagccaggcagccgagtaccat
tccgccaccacacccaccaaccagggctccaagagagagatttacctgtga
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