Oncorhynchus masou masou (cherry salmon): 135526864
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Entry
135526864 CDS
T10723
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04140
Autophagy - animal
omm04148
Efferocytosis
omm05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135526864
04148 Efferocytosis
135526864
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
135526864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135526864
Membrane trafficking [BR:
omm04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
135526864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Motif
Other DBs
NCBI-GeneID:
135526864
NCBI-ProteinID:
XP_064811605
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Position
32:<98..40537
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AA seq
817 aa
AA seq
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LFVVSQYKILVSLLENNIHVHDLLTFQQITVVSKARGATLFACDLQQSPSGEAQLRMCVA
VKKKLQLYYWKDREFYELQVRRGVLRATGDFAAPDIPKSMAWCQNSICVGFKRDYYLIQM
DGRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKYVLNWTDIPIAM
EHQSPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIVYVASNHFVWRLVPVS
IASQIRQLLQDKQFELALQLANMKDDVEGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFA
KLGTDPTHVIGLYPDLLPADYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKH
LNDSEPSTPSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLDNNHCHIEE
SEYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGMENL
VIIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIVHVW
EETEPEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRNKLLCFLEVS
TSYEPGCLIGDFPFDGLLEERAVLLGRMGKHEQALYIYVHVLKDTNMAEEYCHRHYDKET
DRSQDVYLSLLRMYLSPPDGHCLGPIKMELLEPQANLMAALHVLELHHSKLNTTKAIDLL
PANTQIRQIRVFLESVLEEKAQRKRFDQVLKSLLQAEFLRVQEERIFHQQVKCIITEEKT
CRVCKKKIGNSAFARYPNGVVVHYFCCKDRGVCPTEQ
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
ctgtttgttgtgtcacagtacaagatcctcgtcagtctgctagagaacaacatccatgtc
cacgacctcttgaccttccagcagattactgtggtttccaaggccagaggggcaacgctc
ttcgcctgtgacctgcagcagtccccctcgggagaagcccagctgaggatgtgtgttgct
gtgaagaagaagcttcagctgtactactggaaggacagggagttctacgagctacaggtg
agacggggagttctacgagctacaggggactttgctgctccagacatcccgaagtccatg
gcctggtgtcagaactccatctgtgtgggcttcaagagagactactacctcatccagatg
gatggtcgtggttccatcaaggagctcttccccacggggaagcagctggagcccctggtg
gcccccctggctgatgggaaggtggcggtgggccaggatgacctcacggtggtgctcaac
gaggagggggtctgcactcagaagtatgttctcaactggaccgacatccccatcgcaatg
gaacatcagtccccctacatcatagctgtcctgcctcgctatgtggagatcaggaccttt
gaacccagactgctggtccagagtgtggagctgcagagaccacgattcatcacctcagct
gggcccaatatagtgtacgttgccagcaaccattttgtctggcgcctggtgcctgtgtcc
atcgccagtcagatcagacagttactccaggacaagcagtttgaactggccctgcaactg
gcgaatatgaaggatgatgtggaaggcgataagcgacagcagattcaccacatccagaat
ctctatgccttcaatctgttctgtcagaagaggtttgatgactccatgcaggtgttcgct
aagctcggcacagatccgacccatgtgattggtctgtatcccgacctgctccccgctgac
taccgtaaacagctgcactaccccaaccccctgcccagtctgtctggagcagaactggag
aaggctcacctggcgctcatagactacctgacacagaaacgcagccacctggtgaagcac
ctgaacgactctgagccgtccaccccgtctcccctcatggaagggactcccaccatcaag
agcaggaagaaactcctgcagatcatcgacaccacgctgctcaaatgctacctgcatacc
aacgtggccctggtgtcccctctgttgcgtctggataataaccactgtcacattgaggag
agtgagtacatcctgaagaaggcccacaagtacagcgagctcatcatcctctatgagaag
aagggcctgcatcagaaagccctacaggtgttgttggatcagtccaccaaggctaactct
cctctaaagggacatgagaggacggtgcagtacctccagagactggggatggagaatctg
gtcattatctttgagttctctccctgggttctgaagatctgtcctgaggacggactcaag
atcttcactgaggacctgacggaggtggagaccctgcccagagacaaggtcctgaacttc
ctgaaggagggctttaaggagctggctatcccctacctggagcacatcgtacacgtctgg
gaggagacggagccagagttccataacgtcctcattcagctgtacctggagagggtccag
gggctcatgaagcagtacctcaactccctgcccgagggggttcctgcagtggctgctggg
aaggaggagggggacctgggagagtttaggaacaagcttctatgtttcctggaggtctct
accagctacgagcctggatgtcttatcggtgacttcccctttgacggtcttctggaggag
agggccgtgctgctgggtcggatggggaaacacgaacaggccctctacatctacgtacac
gtcctgaaggacactaacatggcagaggagtactgtcataggcattatgacaaagagacg
gacagaagccaagatgtgtacctgtctctactgcgcatgtatctgtcccctcctgacggc
cactgtcttgggccaatcaaaatggagctgttggagccacaggccaatctaatggcagct
ctacatgtcctggagctgcaccacagcaagctgaatacaactaaggccatcgacctgctg
ccagccaacacccagatcagacagatccgtgtgttcctggagagtgttctggaggagaag
gcccagaggaaacgctttgaccaggtcctcaagagtctgctgcaggccgagttcctacgg
gtccaggaggaacgtatctttcaccaacaggtgaagtgtatcatcacagaggaaaagacc
tgcagggtctgtaagaagaagataggaaacagtgccttcgccaggtatcccaacggtgtt
gtagttcattacttctgctgtaaggaccgaggggtgtgtcctacggagcagtga
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