Oncorhynchus masou masou (cherry salmon): 135527838
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Entry
135527838 CDS
T10723
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135527838 (ddx20)
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135527838 (ddx20)
Spliceosome [BR:
omm03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
135527838 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
HypF_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
135527838
NCBI-ProteinID:
XP_064812518
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Position
33:11601085..11609368
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AA seq
828 aa
AA seq
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MASSMKKAAHDIETRKRTDDVVLSGGIDFNALLLSQPVLDGLAASGFKKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFSAIALDSLVMENTTTQVLVLAPTREIAVQIHSVVMAIGS
AMEGLQCHVFIGGTPVSQDKISLKKCHIAVGSPGRIKQLIELGLLVTASIRLFVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYPESLAQHLAHYMREPTFVRLNPSDPGLIG
LKQYYRLVRSHAMPHKVFEEKVLLLLELFSKVPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGSLSQDQRMEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTHGLAVTYCCHGEEENKMMAIAQKCNLILCALPDPIEPGLMQEPCDWDITV
EALTPGTNSQVFPKTERRRRAKTESPAPKPIRDQDPSPVHPESTEPSRPCKSQHTANPVA
KAGLKHKNASPALDVLLPPPKASVVSGASLALSRKEQQDALPKIPPLSAFKSQRSGIMTF
QEAELDFQSFIREGLGRTVEVIRQFRGHGDDGEGFNGQHGYEESHTLQDDDVPLTHTHMT
RNGERPPTPTQLPLKTNSDPSPLESTSDGSSSDCDMEEDRQADESTQSSTDQPRGAEHKP
IIPIQTQSAQQSTVMDGAKKPKFTPPGSQPNSPSVPHPSHHRSPRPEGRAVSTNPGEGEP
LLWKAKGREATAQQWSRETAKKVKGEERKVPGNRGSERKRDRVSEVEEEDDGEGYEGYWR
AYYRAWEDYYASMPPSHHQGYHGYHSMASSWMAAYRMNSVYMEELLKH
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcaatgaagaaggctgcccacgatattgaaacgcgaaaacggactgatgat
gttgtcttgtcgggcggtatcgacttcaacgctctgttgttgtcgcagcccgtgctcgac
ggactggcggcttctggattcaagaaaccgtctccaatccagctcaaagccattccgttg
gggcgatgcggactcgatctgatagtgcaggccaagtctggcacagggaagacctgtgtg
ttctctgccatcgccctggactctctggtaatggagaacactacgacacaggtgctggtg
ctagccccgacccgtgagatagcagtgcagatccactctgtggtgatggctataggcagt
gccatggagggcctgcagtgtcatgtcttcattggggggacgcccgtcagccaggacaag
atcagtctcaagaagtgccacatcgctgtgggatcaccaggacgtatcaagcagctgatt
gagctgggtcttttggttaccgccagcatccgtctgtttgtgctggacgaggctgacaaa
ctactggaggaaggcagcttccaggaccagatcaattggatattctcctctctaccggtc
aacaaacagatgttagccctgtctgccacctacccagaatcccttgcccagcacctggcc
cactacatgagagagcccacctttgtcagacttaacccctccgaccccggactcataggt
ttgaagcagtactacaggctggtgcgctcccatgccatgccccataaggtgtttgaggag
aaggttctgctcctgctggagctgttcagtaaagttcccttcaatcaagctctggtgttc
tccaacctgcacaccagggctcagcatttagcagacatcttgtcctcgaagggccttcct
gctgtctgtatctcaggtagtctgagtcaggaccagcgaatggaggccatgtctaaactg
aagcagtaccagtgtagagtactcatctctactgacctgacctccagaggtatagatgct
gagaaggtgaatctggtgatcaacctggatgttcctcaggactgggagacctacatgcac
cgaataggacgagccggacgctttggtacacacgggctggcagtgacctactgttgccat
ggcgaggaggagaacaagatgatggccatcgctcagaagtgcaacctaattctttgcgct
ctaccagaccccatagagccagggctgatgcaggagccctgtgactgggatatcaccgtg
gaggccctgacaccagggactaattcccaggtgttccccaagacagagcgaaggagacgg
gcaaagaccgaatccccagcccctaaacccatcagggatcaggaccccagccctgtccac
ccagagagcactgaacccagccgaccatgtaagagccagcacacagccaatcctgtggct
aaggctggtctgaagcacaaaaatgcatcccctgccctggatgtcctcctaccccctccc
aaggcttcagtagtctctggggcctccctagctctctcccgtaaagagcaacaggatgcc
ctgccaaagatccctccgctcagcgccttcaagagtcaaaggtcagggatcatgaccttc
caggaggcagagctggacttccagagcttcatcagggaggggctgggaaggacagtggag
gtaatccgacagttcagaggtcacggagacgacggcgagggatttaacggtcagcacggc
tacgaggagtctcatacactccaggatgacgatgtgccactcacacacacacacatgaca
cggaacggagagcgtccaccaacacccacacagcttcctctaaagacgaactctgacccg
tcacctctggagtcgacttctgatgggtccagctctgactgtgacatggaggaagaccgt
caggctgacgagtcaactcagagctccacagatcagcccagaggagctgaacacaaacca
atcattccgattcaaactcaatctgcacagcaatccacagtcatggatggggcaaagaaa
ccaaagtttacgccacctggaagccaacccaactcaccgtctgtaccccatcctagccac
cacagatcccccagaccagaggggagagctgtgagcacaaaccccggggagggggaacct
ttgttgtggaaggcaaagggcagagaggctacagcacagcagtggagtagggagacggct
aagaaagtcaaaggggaggagaggaaggtgcctgggaatcgagggagtgagaggaagagg
gacagagtgagtgaggtagaggaggaggatgatggtgagggttatgagggctactggagg
gcctactacagagcttgggaggattactacgcctccatgcccccctctcaccaccagggt
taccatggctaccacagtatggcgtccagctggatggctgcctaccgtatgaactccgtg
tacatggaggaactgttaaaacactaa
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