Oncorhynchus masou masou (cherry salmon): 135527884
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Entry
135527884 CDS
T10723
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135527884 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135527884 (prpf6)
Spliceosome [BR:
omm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135527884 (prpf6)
Complex C
U5 SnRNP specific factors
135527884 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_16
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
TPR_15
FAT
TPR_1
TPR_9
ARM_TT21_C
ARM_TT21_5th
Dehydratase_MU
Motif
Other DBs
NCBI-GeneID:
135527884
NCBI-ProteinID:
XP_064812583
LinkDB
All DBs
Position
33:complement(15372770..15402369)
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AA seq
1006 aa
AA seq
DB search
MSGRDGNYNNRNQNDGRGSRGGGQNFGRGSGGRGQNDGRGFGGGGQNSGRGSGGGRGGGR
NAEPPPMPMSSPLMGKKKKPFLGMAAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDR
HAPPGQRTVGDKMKKNQEDDEEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALD
KRMDERRKERRELREKDEIEKYRMERPKIQQQFSDLKRKLSGMSDEEWLSIPEVGDARNK
RQRNPRYEKLTPVPDSFFSKHLTTGDKHTTVDPLQGLNLPGGLESPYPGGMTPGLMTPGT
GELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDISDIKKAR
LLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPG
DTAKAVVAQAVRHLPGSVRIYIRAAELETDVRAKKRVLRKALENVSKSVRLWKTAVELEE
PEDARIMLSRAVECCPTSVELWLALARLETYENARRVLNKARENIPTDRHIWITAAKLEE
ANGNTQMVEKIVDRAITSLGANGVEINREQWIQDAEECDKAGSVATCQAVIRAVIGIGIE
EEDCKHTWMEDAESCVSHGALECARAIYAHALQMFPSKKSVWLRAAYFEKNHGTRESLEA
LLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILALAFQANPNSEEIWLAAVKLESEN
NEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIEAAHELCTEALKHYEDFPKLWMMR
GQIEEQSEHNEKAREAYNQGLKKCPHSMSLWLLLSRLEERVGQLTRARSILEKSRLKNPQ
SPDLWLESVRLEFRAGLKNIANTLMAKALQECPNSGILWAEAVFLEARPQRKTKSVDALK
KCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEPDLGDAWALFYKFEMQHGTEEQQE
EVRKRCENAEPRHGELWCAESKHVLYWQKKIGEILTQVASKIKNTF
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcagagatggaaactataacaacagaaatcaaaatgatggtagaggctctagg
ggcggtggacagaatttcggtcgaggctccggtggccgcgggcagaatgatggtagaggc
tttgggggcggcgggcagaattctggtagaggctctggaggtggccggggtggcgggcgt
aatgccgagcccccgccaatgcccatgtcctccccgctcatgggcaagaagaaaaagccc
ttcctagggatggccgcgccgctaggctatgtgcctggactcggcagaggagccacaggt
ttcaccacccgttctgatatcggacccgctcgagatgccaacgacccggtggatgaccgc
catgctcccccggggcagaggacggtgggggacaagatgaagaagaaccaggaagacgac
gaagaggatctgaatgacaccaactatgatgagtttaacggctatgctggtagtctgttc
tccagtggaccctatgagaaagacgacgaggaggcagatgccatctacgcagctctggac
aagaggatggacgaacgacgcaaggagaggagggagctgagggagaaggatgagatagag
aagtaccgtatggagcgccccaagatccagcagcagttctctgacctcaagaggaagctg
tcaggaatgtcagatgaggagtggctgagtatcccggaggttggcgatgccaggaacaag
cgccagaggaacccgcgctatgagaaactcacccctgtaccagacagcttcttctccaaa
cacctgaccacaggagacaagcacaccactgtggacccactgcaggggttgaacctcccc
ggtggtctggaaagcccgtaccctggggggatgacccctggcctgatgacccctgggaca
ggagagctggacatgaggaaaatcggccaggccaggaacacactgatggacatgaggctc
agccaggtgtctgactctgtgagtggacagacggtggtggaccctaaaggttatctcact
gatctaaactctatgatccccacgcatggaggagacatcagtgacattaagaaggcccgt
ctgctgctgaagtcagtgagggagaccaacccccaccacccccctgcctggattgcttcg
gccaggctagaggaggtgacagggaaactacaggtggcccggaacctcatcatgaagggc
actgagatgtgtcccaagagtgaggatgtgtggctggaggccgccaggctgcagccaggg
gacacagccaaggcagtggtggcccaggcggtgcgtcacctccccgggtctgtccgtatc
tacatcagagctgccgagctggagactgacgtcagggccaagaaacgcgtcctcaggaag
gcgctggagaatgtgtcgaagtcagttcgtctgtggaaaactgctgtagaactggaggag
ccagaggatgccaggatcatgctgagcagagctgtggagtgctgtcccactagcgtggag
ttgtggctggcactggcgcggttggagacctatgagaatgccaggcgtgtcctaaacaag
gcccgtgagaacatccctacggaccgacacatctggatcaccgccgccaagctggaagag
gccaacgggaatacgcaaatggtggagaagattgttgacagagccatcacatcactcggg
gccaatggggtcgagatcaacagagaacagtggatacaggatgcagaggaatgtgataaa
gctggcagcgtggcaacgtgccaggcggtgatccgggcggttattggcatcggcatcgag
gaggaggactgtaaacacacttggatggaggatgcagagagttgcgtgtcccatggggct
ctggagtgtgcccgtgccatctatgcccacgccctgcagatgttccctagcaagaagagt
gtgtggctccgcgcagcctacttcgagaagaaccacggcactagggagtctctggaggca
ctgctgcagagggcagtggctcactgtcccaaggctgaggtgctatggctgatgggggcc
aagtccaagtggctggctgaggacgtgcctgctgcccgcagcatcctggctctggccttc
caggctaaccctaacagtgaggagatctggctggctgctgtgaagttggagtctgagaat
aatgaatatgagagagcacgtcgactactggccaaggcccgcagcagtgctcctactgcc
agggtgtttatgaagtcagtaaagctggagtgggttttggggaacatcgaagcggcccac
gagctgtgtaccgaggctcttaaacactatgaggacttccccaagctctggatgatgagg
ggacagatagaggagcagtctgagcacaacgagaaggccagggaggcctacaaccagggg
ctgaagaagtgtccccactccatgtccctgtggctgctgctgtctcgtctggaggagagg
gttggccagctgaccagggccagatccattctggagaaatcacgcctcaagaatccacag
agcccagacctatggttagagtcggtgagattggagttcagggcagggctgaagaacatc
gccaacacactgatggctaaagccctacaagagtgccccaactcaggtatcctgtgggct
gaggcagtgtttctggaggcacggccccagaggaagacgaagagtgttgatgctctgaag
aagtgtgaacacgacccacatgtcctgctagccgtggccaagctgttctggagcgagcgt
aagatcactaaggccagagagtggttcctgaggacagtgaagattgagccagacctggga
gatgcctgggccctcttctacaagtttgagatgcaacacggcactgaggagcagcaggaa
gaggtgcgtaagcggtgtgagaatgctgagccgcgtcacggagagctgtggtgtgccgag
tccaaacatgtcctctactggcagaagaagataggagagatcctcacacaggtcgcttcc
aagataaaaaacaccttctaa
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