Oncorhynchus masou masou (cherry salmon): 135532127
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Entry
135532127 CDS
T10723
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
omm03016
]
135532127 (trub1)
Enzymes [BR:
omm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
135532127 (trub1)
Transfer RNA biogenesis [BR:
omm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
135532127 (trub1)
Prokaryotic type
135532127 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
135532127
NCBI-ProteinID:
XP_064815826
LinkDB
All DBs
Position
Unknown
AA seq
300 aa
AA seq
DB search
MAGSVTGVAVPKHSLSKLQSLNGLFAIYKKEGPTSADVLNSLKETLLKEAGVKDPNPRKR
KKQALKMGHGGTLDSAASGVLVVGIGNGTKMLSTMLAGSKKYMAVGELGKATDTLDATGK
VVHEKLYDHITREAFEEKLKQFTGDIMQVPPLYSALKKDGKRLSVLLKQGHEVEAKPARP
VTVYNLSLQDFTPPLFTLDVECGGGFYIRSLVDDLGKALLSCAHVRKLIRTKQGQFTLDD
HTLQEEHWTLQHIVQSMQPCPGSEVTKEDGTKPSPNLGVKRALNAQVKGDKNGKDEKGEL
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggctggttcagtaactggcgtagctgtgcctaaacattctttatcaaaactacaatct
ttaaatggactttttgccatttataaaaaggaaggacctacgtctgctgatgttttaaac
tcattaaaagagacactcctcaaagaggccggtgtgaaagatcctaatcccagaaaaagg
aagaagcaagctctgaaaatggggcatggcgggactctggacagcgcagcctctggtgtg
ctcgttgttgggattggaaatggaacaaagatgcttagtactatgcttgctggttcaaag
aaatacatggctgttggagagttggggaaagcaacagacacccttgacgccacaggcaag
gtggttcacgagaagctctatgatcacattaccagggaagcctttgaggagaagttgaag
cagttcactggggacatcatgcaggttcctccactgtactctgcactgaagaaggatggc
aagcgtctttctgtcctgctgaagcaaggccacgaggtggaagccaaacctgcacggccg
gtcacagtgtataacctgtcgctgcaggacttcactccccccctcttcactcttgatgtt
gaatgcggtggaggattttatatcagaagcttggtggacgacctgggaaaagcgctcttg
tcgtgtgcccacgtgaggaagctgatccggaccaaacagggtcagtttacccttgacgac
cacacgctgcaggaggaacactggacactacaacacatcgttcagtccatgcagccctgt
cccgggtcagaggtcaccaaggaggatggcacaaaaccaagcccaaacctgggggttaaa
cgggccctgaatgcccaggtgaagggggataagaatggcaaagatgaaaagggggagtta
taa
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