Oncorhynchus masou masou (cherry salmon): 135532240
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Entry
135532240 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: intermembrane lipid transfer protein VPS13C-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135532240
Membrane trafficking [BR:
omm04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
135532240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
Motif
Other DBs
NCBI-GeneID:
135532240
NCBI-ProteinID:
XP_064815906
LinkDB
All DBs
Position
Unknown
AA seq
2361 aa
AA seq
DB search
PGTDLDFTSLGTELDFTSLGTELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELD
FTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGP
ELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTS
LGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTQPGLGPE
LDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSL
GPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDF
TSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPE
LDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSLGPELDFTSL
GPELDFTSLGPERDFTSLGPERDFTSLGTELDFTSLGPDRDFTSLGTERDFTSQGTERDF
TSQGPERDFTSLGTELDFTSLGTDLDFTSLGPELYFTSLGTDLDFTSLLIFCPGNVVLEN
LKVKENALSELDVPFKVKAGQIGKLTLKIPWKNLYNDAVVATLDGLYLLVVPGATVSQLR
TCPYNAIKYDAAKEERYQQEAKQKELQRIEEALLIAARRDSQTGELLFNLESVVYKEPQH
EKPQKDEKKDTFAEKLATQVIKNLQVKITSIHIRYEDDILDPQQPLSMGVTLAELSLQTT
DENWKSCILNEAARIIYKLGRLECLCAYWNVNSPIFYKGSREEILEKLKDGISTKDQEIK
DYQYIFKPIFASAKMVINPSAEIELKSPKASLHLEVQNVAVEMTRPQYLTMVDLLESIDC
MVKNGPYRKFRPDVPVHTNAKHWWKYSMNSILDVHVRRFNQMWSWSNIREHRHTLKTYRA
AYKAKLLTAQGKLREDQEKQIQDLEKSLDVFNITLARQQAQMEVIRSGQKVEAKKAVAGQ
KQGGGFFSSFFGRKEGKKKEQEQETQEEEGTGIEELMSADEKAKLYTAIGYSGSSHNLAL
PKQYVAVVVTFKLFRTSITVREEPNVPEILKIQMIDLSTTVSQRPGAQAIKVEAALEHWY
VTGLEQQGAVPSLIASVGDSTSSLLSILFEVNPEDSVAEQLLRVHSQPVEIIYDSLTVNS
MAEFFKTGKGVDLEVLTSATLSKLEEIKDKTATGLSHIIETRKILDLKIDLKPSYLLVPK
SGFYHAKSDLMIIDFGSLQLVSVDQGNAQSLSPSFSSLEEIMDRAYEKYSLELRSVQVLY
SKSGEEWKTARQRGSSIQHILQPMDFSLQLAKCMVEKDTRMSRFKVSGELPLLHVKISDQ
KIQGVLDLVNSIPLPQSGSTPSTPTQKMLCLSEARPNVLGLQSTVLLDALETDSDGESYY
MSVDEERQPSGIEELTDVHFKFEVKAVLLELTRQADQENTLLALSVSQLGAEGKMRTYDL
TITSYLRKVGLDYCEIRDSNNQPLQLISSSDKHGSDLLKVEYTKADVNGPNFQTTFDNTE
QNLKVELSSLDFLLHTKALLSTINYLNTALPQELTASKDREAKKQVEKAGQGKTVSKGAK
NSNVINFKLSANLGSFRVEVCDDRRNIADITIQGIDGSVLVQAKETMVFARLRDIVVLDV
DPKTIHKKAVSIVGEEVFSFQMSLYPNATEGEGYSDTSKVDGKVTMRLGCIQIVYLHKFL
MSLLTFLDNFQTAKEAVSVATAQAAEKAASSVRDFAQKSFRLSMDIKLKAPLIVIPQSST
SRNAFVVDLGLITVGNGFSLMSAEGFSLPAVLDTMDVKLTQLKLSRTTLKQGSPQTDIEI
LQPINLELLVKRNLASSWYNEIPGVEVQGMLKSMNMALGQEDFGVLMKTLRENIGEGSKE
HVMDVKKQVARDKAEQHQLEGNEVGCLPVEAGGGQQPAAVTHAGGLGENIVNMLLNLEIK
EVVVKLKKSRSDQKESPFLVLHVAQLGIHTNVRKYDMVATTYIKKISMKCLEFSDSNGEP
LCLISSSVESGADLLKVEYFKADRNGPNFATVHKNTEQMINVTFTSLDLLLHTEALLSTI
DFLSSALSSGSLPPSPEEPKQKSEESSRAISAKSTALGSPSDGDVVDLKVMMRLGAFNVL
VCDQNCNMADIKIQGFNGSLLMQGPQTHISARLRDFIVINVDPKAISIVGDEVFSFSMSL
TPKATEGAGYADTSKTDGKVQLNVGCVQVVYLHKFGMSLLNFSNNFQTAKEAVSVATAQA
AEKAASSIRDFAQKSFRLSMDIRLKXPLIVIPQSSTSHNALEVDLGLITVGNSFSLLAVE
GCPLPAVIDHMDVQLTQLKLS
NT seq
7085 nt
NT seq
+upstream
nt +downstream
nt
ccgggcacagatctagactttactagcctgggcacagagctagactttactagcctgggc
acagagctggactttactagcctgggccctgagctggactttactagcctgggcccagag
ctggactttactagcctgggcccagagctggactttactagcctgggcccagagctggac
tttactagcctgggcccagagctggactttactagcctgggcccagagctggactttact
agcctgggcccagagctggactttactagcctgggcccagagctggactttactagcctg
ggcccagagctggactttactagcctgggcccagagctggactttactagcctgggccca
gagctggactttactagcctgggcccagagctggactttactagcctgggcccagagctg
gactttactagcctgggcccagagctggactttactagcctgggcccagagctggacttt
actagcctgggcccagagctggactttactagcctgggcccagagctggactttactagc
ctgggcccagagctggactttactagcctgggcccagagctggactttactagcctgggc
ccagagctggactttactagcctgggcccagagctggactttactagcctgggcccagag
ctggactttactagcctgggcccagagctggactttacccagcctggcctgggcccagag
ctggactttactagcctgggcccagagctggactttactagcctgggcccagagctggac
tttactagcctgggcccagagctggactttactagcctgggcccagagctggactttact
agcctgggcccagagctggactttactagcctgggcccagagctggactttactagcctg
ggcccagagctggactttactagcctgggcccagagctggactttactagcctgggccca
gagctggactttactagcctgggcccagagctggactttactagcctgggcccagagctg
gactttactagcctgggcccagagctggactttactagcctgggcccagagctggacttt
actagcctgggcccagagctggactttactagcctgggcccagagctggactttactagc
ctgggcccagagctggactttactagcctgggcccagagctggactttactagcctgggc
ccagagctggactttactagcctgggcccagagctggactttactagcctgggcccagag
ctggactttactagcctgggcccagagctggactttactagcctgggcccagagctggac
tttactagcctgggcccagagctggactttactagcctgggcccagagctggactttact
agcctgggcccagagctggactttactagcctgggcccagagctggactttactagcctg
ggcccagagctggactttactagcctgggcccagagcgagactttactagcctgggccca
gagcgagactttactagcctgggcacagagctagactttactagcctgggccctgatcga
gactttactagcctgggcacagagcgagactttactagccagggcacagagcgagacttt
actagccagggcccagagcgagactttactagcctgggcacagagctagactttactagc
ctgggcacagatctagactttactagcctgggccctgagctatactttactagcctgggc
acagatctagactttactagcctgctcatcttctgtccaggcaatgttgttctggaaaac
ttgaaagttaaagaaaatgctttgagtgagctggatgttccatttaaagtgaaagctggt
cagattggaaaactgacattgaagatcccttggaagaacttgtacaatgatgctgtagtt
gcaacgttagatggtctctatctgctggtggttcctggagcaactgtgtctcagttacgt
acatgtccatacaatgcgataaagtatgacgccgcgaaggaggagcgttaccagcaggag
gccaagcagaaggagctgcagcgcattgaggaggcgctactgattgctgctcgcagagac
tctcagactggagagctgctgtttaatctggaaagtgttgtgtataaggagcctcagcat
gaaaagcctcagaaagatgagaagaaggacacgtttgctgagaagctggccacgcaagtc
atcaagaacctgcaagtcaagatcaccagcatccatatccgatatgaggacgatatatta
gacccccagcagcccctctctatgggagtcaccctggctgagctgagtctacagacgacc
gatgagaactggaagtcgtgtattctgaacgaggcagccaggatcatctacaagctgggc
cgtttggaatgtctgtgcgcctactggaacgtcaacagtcccatcttctataaaggctcc
cgggaagaaatactggaaaagctgaaggacggcatcagtaccaaggaccaagagatcaaa
gactaccaatatattttcaaacccatctttgcctctgctaaaatggtaatcaacccgagt
gctgagattgagctgaagtctcccaaagccagcctgcatctggaggttcagaatgtagca
gtagagatgaccagaccacagtacctaaccatggtggacctgctagagtctatagactgt
atggtgaagaatggaccctacaggaagttcagacctgatgtacctgtacacacaaatgcc
aagcactggtggaagtacagtatgaacagcatcctggacgttcatgtcagacgtttcaac
cagatgtggtcgtggtccaacatcagggagcaccgccacactctgaagacctacagggca
gcctacaaggccaaactactgacagcacagggcaaactcagagaggaccaagagaagcag
atacaggacctggagaagagcctggatgtcttcaacatcacgttggcccggcaacaagca
cagatggaggtgatccggtcagggcagaaggtagaagctaagaaggctgtggccggtcag
aagcagggaggagggtttttcagcagcttctttggaaggaaggaagggaagaagaaagag
caggaacaggaaacccaggaggaagagggtacaggcattgaagagttgatgtctgctgat
gagaaggctaaactctacacggccatcggatacagtggtagttctcacaacctggcctta
cccaagcagtacgtggcagtggtggtgaccttcaagctgttccgtacgtccatcacggtg
agggaggagcccaacgtcccagagatcctgaagatccagatgatcgacctcagcaccacc
gtctcccagagacccggggcgcaggccatcaaggtggaggcagcgttagaacactggtac
gtaacagggttggaacagcagggagctgtcccctctctcatagcgtcagtaggggactcc
acctcctctctgctctccatcctgtttgaagtcaacccagaggacagcgttgcagagcag
ctgctcagagtccactcccagcctgtagagatcatctatgactcgttgacagtgaacagc
atggcagagttctttaagacagggaagggagtggacctggaggtgttgacttcagctact
ctctccaagttggaggagattaaggacaagacagccactggtctgtctcacatcattgag
acccggaagattctggacctgaagattgacctaaagccttcatacctgctggtgcctaag
tctggcttctaccacgccaagtctgacctgatgatcatagacttcggtagtctacagctg
gtgagtgtggaccaggggaacgcccagtcgttatcacccagtttcagctccctggaggag
attatggaccgtgcctacgagaagtactcactggagctacgcagtgttcaggtcctttac
agcaagtcaggtgaggagtggaagacggcccgtcaacgtggttcctctatacagcacatc
ctgcagcccatggacttcagcctccagctggccaaatgcatggtggagaaggacaccagg
atgtccagattcaaggtgtctggagaactgcctctcctccatgtgaagatctcagaccag
aagatccagggagtgttggacctggtcaacagcatccccctaccccagagtggttccacc
ccttccacccccacccagaagatgctgtgtttgtctgaggccaggcccaacgtcctgggt
ttacagtccaccgtcctgctggatgcattagagacagattcagacggagagtcatattat
atgtccgtggatgaggagcgccaaccctccggcatcgaggagctgactgacgtacacttc
aagtttgaagtcaaagcggtgctgttggagttgacgcgtcaggctgaccaggagaacacg
ctgttagccctcagtgtgtctcagctgggagcagaaggcaagatgagaacctatgacctc
accatcacctcctacctccgtaaagtaggcctggactactgtgagatacgagactccaat
aaccagcctctgcagctgatcagctcctcagacaagcacggctcagacctgctcaaagtg
gagtacaccaaagctgatgtcaacgggcctaatttccagaccacgtttgacaacactgag
caaaacctgaaggtggagttgtcatcgctagactttctcctccacaccaaagcgctcctc
tccaccatcaactatctgaacacagccttaccccaggagctgacagcctccaaggacaga
gaggccaagaaacaggtggagaaggctggacaggggaagacagtgtcgaaaggagcaaaa
aacagcaatgtgatcaacttcaaactgtctgctaatctgggttcattccgtgtggaggtg
tgtgatgaccggcggaacatcgctgacatcacaatacaaggtattgatgggtcggtgctg
gtccaagccaaagagacaatggtgttcgccaggctcagggacatagtggtgctggatgtc
gaccccaaaaccatccacaaaaaggccgtctccatcgtgggcgaggaggtgttcagcttt
cagatgtccctgtatcccaacgctacggagggagagggttactcagacacctccaaggtg
gacgggaaggttaccatgaggctgggctgcatccagatcgtctatctgcacaagttcctc
atgtctctactgacgtttctggacaacttccagacggccaaggaggcggtgagtgtggcc
acggcccaggcagcagagaaggcggcctccagcgtcagggacttcgcccagaagagcttc
cgtctctccatggacatcaagctgaaggcccctctcatcgtcatccctcagtcctccacc
tcacgcaatgcgtttgtggtggacctggggctcatcaccgtgggcaacggtttcagtctg
atgtcggccgaagggttctcgctccccgctgtgttggacaccatggacgtcaaactcact
cagctcaaactgtccaggaccacgctgaaacaaggctccccacagacagacatcgagatc
cttcagccaatcaatttagagcttctggtcaaacggaacctggcctcttcctggtacaac
gagatccctggagtagaggttcaaggaatgctcaagtctatgaatatggctctaggtcag
gaggactttggtgttctgatgaagacactgagggagaacatcggagagggcagcaaagag
cacgtcatggatgtcaagaaacaagtagcccgagacaaggcagagcagcaccagctggag
gggaatgaggtgggatgtctacctgtggaggctgggggaggacaacagcctgctgctgtt
acccatgcaggaggactgggagaaaacatcgtcaatatgctgctcaacctggagattaag
gaggtggttgtgaagctgaagaagtccaggtcagatcagaaggagagtccgttcctggtt
ctccacgtagcccagctgggcatccacaccaatgtcaggaagtacgacatggtggccaca
acgtacatcaagaaaatctccatgaagtgcctggagttctcagattccaacggtgagccg
ctgtgtctcatcagttcctctgtggagtcaggtgcggacctcctcaaagtggaatacttc
aaggctgacagaaatgggccaaactttgccactgttcacaagaatactgagcagatgatc
aatgtgaccttcacctccctggatctactgcttcacacggaggctctcctctccaccata
gacttcctgtcttctgccctgtcctccggcagcctgcccccctcaccagaggagcctaag
cagaagtctgaggagagcagcagggccatctccgccaagtcaacggctctaggttctccg
tcggacggtgacgtcgtcgacctgaaggtgatgatgcggctgggggcgttcaacgtcctc
gtgtgtgatcagaactgcaacatggctgacatcaagatacaaggtttcaatggatccctc
ctgatgcaagggcctcaaacccacatctccgcccgccttcgggatttcatcgtcattaat
gttgacccaaaagccatctctatcgtaggagacgaggtgtttagtttcagtatgagtctg
acccccaaggcgacagagggagccggctacgcagacacctccaagacagacgggaaggtc
cagctcaacgtgggctgtgtccaggtcgtctacctccacaagtttggcatgtctttgttg
aatttcagcaacaacttccagacggccaaggaggcggtgagtgtggccacggcccaggca
gcagagaaggcggcctccagcatcagggacttcgcccagaagagcttccgtctctccatg
gacatcaggctgaagngccctctcatcgtcatccctcagtcctccacctcacacaatgca
ctggaggtggacctggggctcatcaccgtgggcaacagcttctctctacttgctgtggag
ggatgtccacttcctgctgtcattgaccacatggacgtacagctcacacagctcaaactg
tccag
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integrated database retrieval system
