Oncorhynchus masou masou (cherry salmon): 135533979
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Entry
135533979 CDS
T10723
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
Enzymes [BR:
omm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
135533979 (parn)
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135533979 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135533979
NCBI-ProteinID:
XP_064817220
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Position
5:14321886..14359239
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AA seq
697 aa
AA seq
DB search
MEVTRTNFKDSLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYMKLKKH
SMDFLLFQFGLCTFTYDQAESKYVIKTFNFYIFPKPFNRTSPDTKFICQSSSIDFLASQG
FDFNKVFRHGIPYLNQEEEVQLREQYEERRSQSNGSGNPSYISPNSNKGPGSIPEEHREY
IGRVVEKVESLFTTSEKTVDLEPCTGFQRKLIYQTLNSKFPKGLHVETLETEKKERYIQI
SKVDDEERKRRERQKQEREQEELNDAVGFSRVIHDISKSGKLVVGHNMLLDVMHTIHQFY
CVLPEELNDFKEVTQCVFPRLLDTKLMATTQPFKELINITSLAELQKQLKESPFKSPTVV
TAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANYLGTFLTPPRAHIPSQSKLIQPFVNK
LFLMRIIDIPYLNLSGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYVQGRQQVRESQGHSTQSWDEDGWVKPHYT
SPSTVGAGPTGYSYGHNRPSLGKRCVSPIQEEQPAEGEAQRSHADGWSGYTHSHTHSDTG
SKKIRPSVCVRTYAGVVDSRTSEGWLKTQSESDSSSMSPIQEEAGSEAGDDASDPAAGEW
QQQPSTNQSKKSRKNNRKRKTDGAETTSSLFDVPQVW
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaacaaatttcaaagacagtttaagcactgtgtacagcgcaatagag
gaagcagactttctcgcaatcgatggggaattttcaggtattagcgatgggcccaacgtc
agcgcactgactaacgggttggacacgccagaggagcgctacatgaagctaaaaaagcat
tccatggacttcttgctgtttcagtttggactatgtacgttcacatatgaccaggcagag
tccaagtatgtcatcaagacttttaatttttatatattcccaaagccgttcaacagaacc
tccccagacaccaagttcatctgccagagttccagcattgacttcctggccagtcagggt
tttgacttcaacaaagtgttccgtcacgggatcccgtacctgaaccaggaagaggaagtg
cagctgcgggagcagtatgaggagaggcggagtcagagtaacggctcaggaaacccctcc
tacatctcccccaactcaaacaaaggccccggcagcatccccgaggagcacagggagtac
atcggacgggtggtagagaaggtggaatctctgttcactacctcagagaagactgtggac
ctagagccctgcactgggtttcagaggaagctgatctaccagactctcaactccaagttc
ccaaaaggtcttcatgtggagaccttggagacagagaagaaagagcgttacatccagatc
agcaaggtggacgacgaggagcggaagaggagagagcggcagaaacaggagagagaacag
gaggagctgaatgacgctgtgggattctccagggtcatacacgacatctccaaatctgga
aagttggtggttggccacaacatgctcctggacgtcatgcacaccatccatcagttctac
tgcgtactgccagaggagctgaatgactttaaagaggtcactcagtgtgtcttccccagg
ctgttggacaccaagctcatggccactacgcaaccgttcaaggagttgatcaacatcacg
tctctagcagagctgcagaaacagctgaaagagagccccttcaaatctcctacagttgtg
acggcggaggggttccccagctacgatacagcccaggaacagctccacgaggcgggctac
gatgccttcatcactggtctctgcttcatctccatggccaactacctcggtactttcctg
actccccccagagcccacatcccatcccaatcgaaactcatccaacccttcgtcaacaaa
ctgttcctgatgaggatcatagatattccctacctcaacctcagcggaccagacctccag
cccaagagggatcatgttctgtacgtcaccttccctaaggagtggaagaccagtgacctc
taccagctgttcagtgcctttggtaacatccaggtgtcgtggattgatgacacgtcagcg
tttgtgtctctgagtcagacggaccaggttcagatcgcgatgaacaccagtcgctacgcg
gagagctaccgtatccagacgtatgccgagtatgtccagggcaggcagcaggtcagggag
agccaaggccattctacccagtcctgggacgaggacggctgggttaaaccgcactacacc
tccccctctacagttggtgctggtcctactggctacagctacggtcacaacaggccgtcg
ctggggaaacgctgcgtcagtccaatccaggaggagcagcctgcggagggagaggctcag
agatcacacgctgacggatggagtggctacacgcactctcacacacactccgacacgggc
agcaagaagatcagaccgagtgtgtgtgtacggacgtatgcaggagtcgtggacagtagg
acgtcagaaggctggctgaaaactcagtccgagtctgattcgtcgagcatgagtccgatc
caggaagaggcggggtcggaggcgggagacgacgctagtgatccggcggcgggcgaatgg
caacagcagccttcaaccaatcagagcaagaagagccgcaagaacaacaggaagaggaag
actgatggtgcagagacgacgtcttctctgttcgacgttcctcaggtctggtag
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