Oncorhynchus masou masou (cherry salmon): 135537014
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Entry
135537014 CDS
T10723
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135537014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135537014
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135537014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
FANCAA
Motif
Other DBs
NCBI-GeneID:
135537014
NCBI-ProteinID:
XP_064819298
LinkDB
All DBs
Position
Unknown
AA seq
629 aa
AA seq
DB search
MSAEEAADKTTPADASAGDGGDEEEEWLYGDDDERADEEEAKLSAAVSAPIPATESDEAA
TTGNGVEAQEKEPGDDDDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGVAPVNLNIKTAG
ARPYGTVGNKLKGVDLEAPGNINGVPVVEVDMETFEEKPWRKPGADLSDYFNYGFNEDTW
KGYCDKQKRLRMGLEVVNISSTTSKITVRHNISSTTSKITVQQGRTGNEKEVSLPIHTSK
PDFPTPASLYKSSMNMNTTRISPPQWTTPPVQDMSYYTKTSGTIDVIGGGTATISRVEGR
RRHNLEGNNIQVISEHSSSDAEQNPNKMPPFFPPGPLPPNIPPPPFLPPPPNVSQAPPLI
PPPRIPMNVPPPGFPPPSGPPPSLIPTLDSSGHPGGYDVRPVPPYPFPTGGFPPPMTGGY
PPPMPGVVSPWPPMMDQSKQWDYYPPGPGPGPGPRREDKREKERERPRERPHEREREREH
SPSTMAYNSDEERYRGYREYQAERGYSGGDRGGGDRGGGERGGVDRGGDRGGGERGGDRG
SGGERGGGGGERHRDRSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRH
KHKKSKRSKEGKEPSDDMGGDQENQDTME
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaagaggcggcagacaaaacaaccccggcggacgcgagtgcgggagatggc
ggagacgaggaggaagagtggctctacggagatgatgatgagagagctgatgaagaagag
gccaaactatccgctgctgtcagtgcacctattcctgctactgagtcagacgaggcagct
actacaggcaacggagtggaagctcaggagaaggagccaggagatgatgacgacagtgat
agcgacagcgatgatgatgacgatgatgttcgtgtcaccatcggagacatcaagaccgga
gccccacagtacacaacgtatggagtggcccctgttaacctgaacataaagacggcggga
gccagaccctatggaacagtagggaacaagttgaagggtgtggatctggaggccccggga
aacatcaatggagtcccagtcgtggaggtggacatggagacattcgaggagaaaccctgg
aggaaaccaggtgctgacctgtctgactactttaactatgggttcaacgaggacacgtgg
aagggctactgtgacaaacagaagaggctgaggatgggcctggaggtcgtcaacatctcc
tccaccaccagcaaaatcactgtaagacacaacatctcctccaccaccagcaaaatcact
gttcagcagggcaggacggggaatgagaaggaagtgagtttacccatccacacgtccaaa
cctgacttccccactccagccagcctctacaagtcctccatgaacatgaacactaccagg
atctcccccccacagtggacgactccccccgtccaggacatgtcctactatacgaagacc
agtggtacgatcgacgtgattggaggagggaccgctaccatcagcagagtggagggacga
cgaagacacaacctggagggaaacaacatccaggtgatttcggaacactcgtcgtcggac
gctgagcaaaatcccaacaagatgccccccttcttcccccccggccccctcccgccaaac
atccctcctcccccattccttccccctcctcccaacgtcagccaggctccccctctcatc
cccccaccaagaatacctatgaatgtccctcctcctggtttccctcctcccagcggcccc
cctccatctctcatccccaccttggacagcagcgggcatccaggtggatatgatgttcgt
cctgttccaccataccccttccccacaggtggtttccctcctcctatgacaggcggctac
cctcctcctatgccaggtgtggtgtctccatggcctcctatgatggaccagtctaaacag
tgggactactaccctccagggccgggaccaggaccaggacccagacgggaggacaagagg
gagaaggagagagagagacccagggagagaccacatgagagggagagagagcgagagcac
agcccctccactatggcttacaacagtgacgaggagcggtaccgtggttaccgggaatac
caggcggagcgtggctacagcggcggtgaccgcggaggaggtgaccgcggagggggggag
cgtggcggcgtagaccgtggaggtgaccgcggagggggagagcgtggcggtgaccgtggc
agtggtggtgagcgtggtggtggaggcggggagcgtcacagagacaggtcgagccgtgag
aaggaggagagacacagagagagaagacacagagagaaggaggaggggagacacaagtca
tcacgcagtagcagcaggaggagacatgatagtgaagaaggagacggtcacaggagacac
aaacacaagaagagcaagaggagcaaggagggcaaggagcctagtgatgacatgggagga
gaccaggagaaccaggacaccatggagtga
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