Oncorhynchus masou masou (cherry salmon): 135537077
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Entry
135537077 CDS
T10723
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135537077
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135537077
NCBI-ProteinID:
XP_064819359
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Position
5:22031515..22059334
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AA seq
1614 aa
AA seq
DB search
MDNLTTTKIVNAGAGGKVVKETVTTTTRLTSLPPTSGGLSSRSGLLSTGGGESTSRAITG
GSSSVLVSSAAAGSVGGAKFGGSVSKSTTITTIESPSLSSGASGASGAAFRSLGASGASF
GASKTSGSLSVSGGGLMPSSSSSFFTGSSSGGSSSGFVSSSKGTGAGGFVTGSSSGFVSS
SKGAGAGVGGDSFVTGSSSGSSSGFASSSGAGIGGGDSSSAKMSAGGLGSVTVSTVTRSN
YSSLAGAGSGGVKRGGAQGSASSALSYSPTPTERKSMTSTMIARSMSYEGRSSGNSSPEY
TRREYAAESAVASKPTRGRSHSRESEIRCRLQSASPTAKRWTELDDVKRLLKGSRSSSIS
PPRSPTSTLPIPRKASVETRTMPNSSQSGQCATLDSGMPSYVWSGPTAGGYGYHSNAINR
SPTSTLQHSPTTLTATGFQNNLALSSTSMNSGLSASSTVHGMQNNLASTTGGILTANGVN
AQTVYGVQKNVTSTGVSTTTVAPSTPTSDEVFAKEYKFMLLEKEKAPVKKETERLIMAKD
TGKQFSSAATAIAYSEDSLKKEKKKVSSFVETATARTTETNAGSLTKVSTKDKATYAEIR
KDESGGGLGFWSCCSWLKWLLGILLGLLLLLGLLLGLIALAEEVKRLKARVDALEQASSS
SSAHSSRLSSSSAINIIDPLESAYMDKTSSPSSTTLLRTDNGINLGVAAGAGPGSANGPG
QDPVALQRAVQQIVRSELQSDTVRATLAHSMKGARGEPGTKGDQGGPGVKGDNGFPGLPG
PPGQMGHSGLEGPRGPKGNAGEAGAEGPPGQKGREGPTGSRGEPGPPGFGEKGDKGSPGE
SGGPGPAGTAGPVGPKGSVGGQGATGIPGTPGPQGFRGEAGAPGPKGEKGAAGPPGNKGE
PGEKGLRGTSGDPGQRGPPGPDGANGSKGPAGAPGADGEKGSRGDKGLDGLPGPRGPAGP
PGDSGLPGIAGLQGPPGIPGNPGQPGGKGEAGEPGRIINAAGSSSVAIPGPPGSPGPTGV
SGSPGLSGPVGPAGLPGTPGPRGERGEEGEKGDQGKPGITIQTVETTERRAPVASLPGPP
GPPGPPGEPGPQGLLGKGPPGPEGPQGVPGVPGVGVPGPRGDKGEPGSFVPNSGTFFAGP
PGPAGPTGLPGSPGPQGYQGDPGQPGLPGVPGDPGVGFPGPQGQPGGPGPEGDSGPPGPQ
GPEGPEGQPGPKGEAGVPGAPGIPGYSSGGSSRSSLGAPGPPGPPGAPGRDGPPGSGSGT
PDVRQYITEYLKSDGVREYMSGPPGPPGVPGPPGDGSVESVDDLASRVIAYIQSGGIASG
VPGPPGPPGAPGGGSTSLNDIISLLQSEEVRRYVIGPPGPAGPPGIPGIPWRGGYGFNTH
EVAGRVLTLMNDAEYRGALGAQGSPGPPGVPGPAGPQGPAGPSGQAPYSGSGYRLEEVKD
YIQSGLRGGMFGPPGPPGPPGPQGHKGEQGNSGYGHAFDHRTSEGRRLAETETDFSNIAV
RVTDYIKYHGLLRDVVENRSQLEKSQVVQGPPGPPGPPGFSRVFGSHSNVTDLMEYIRAH
GNMVGPPGRPGQKGDIGHTGHKGERGLDGIPGRTGLPGLEWKRGGRGRKANTHL
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaacgacaaccaagattgtaaatgctggtgccggtggcaaggtcgtcaaa
gaaacagtaaccacaacaacccggttgacatcactgccgccaacctcaggtggtctctct
tcgaggagcgggctgctctctactggaggaggagagtctaccagtagagccatcacagga
ggcagtagctcagtgctagtatcctctgctgcagccgggtctgtgggtggagctaagttt
gggggatccgtcagcaaatcaaccaccattaccactatagagtccccctctttatcctcc
ggtgcttcaggggcctctggcgcagcttttcggtctttaggggcttcgggggcatcgttc
ggggcgagcaagaccagcggctctctttccgtttctggagggggtcttatgcctagctcc
agttccagttttttcactggttccagttctggtggttccagttctggttttgtctctagt
tccaaaggaacaggagcaggaggttttgtcactggttccagttctggttttgtatctagt
tccaaaggtgcaggagcaggagtaggaggagacagttttgtcactggttccagttctggt
tctagttctggttttgcctctagttctggtgccggaatcggaggaggggattcttctagt
gccaaaatgtcagccggcggcttgggctctgtgaccgtttccacggttaccaggtccaac
tacagctccttggcgggggcgggttcagggggcgtgaagaggggtggggcacaggggtct
gcatcctctgctctcagctactcccccacccccacggagagaaagagcatgaccagcacc
atgatcgcccgctccatgagctacgaaggaagatccagtggaaactcatctccggaatac
acaaggagagaatatgctgcagaaagtgcagttgccagtaaacccaccagagggcggagc
cacagcagggagagtgagatcagatgcagactgcaaagtgcctctcccactgctaaaaga
tggacggagctggatgacgtgaagcggctgctgaaggggagtcgctccagcagcatcagc
ccccctcgctcccccaccagcaccctccctatccccaggaaggccagcgtagagaccaga
accatgccaaacagctcccagtcaggccagtgcgccaccctggactcaggaatgccttcc
tacgtgtggtcaggccccacggctggaggctatggttaccacagcaacgccatcaaccgg
tcccccacctccaccctccaacactcacccaccacactcacagccacagggtttcagaat
aacctggctctcagctctacatccatgaactctggactctctgcctctagcactgttcat
ggtatgcagaataacctggcctccaccactggcggcatcctaacagctaatggagtcaac
gcacaaacagtctatggtgtgcagaaaaatgtcacaagcacaggggtgtccacaaccaca
gtggcacccagcactcctaccagtgacgaggtcttcgccaaagaatacaaattcatgctg
ctggagaaagagaaagctcccgtcaaaaaggagacggagagactcatcatggccaaagat
accggcaagcagttctcctctgctgccactgctattgcctattctgaggactcgctgaag
aaggagaagaagaaggtgtccagctttgtggagacagctacagccagaaccacagaaact
aacgctggatccttgacgaaagtgtcaacgaaagacaaagcaacctatgcagagatacgt
aaggatgagtctggaggaggtctgggcttctggtcttgctgctcctggttgaagtggctg
ctgggcatcctgctgggtcttctgctcctcctggggctcctcctgggactcatcgccctg
gccgaagaagtcaaacgtcttaaagctcgtgtggacgccttggaacaagcctccagttct
tcctcagcacattctagtcgcctctcctcctcctcagccatcaacatcatagaccctctg
gagtctgcatacatggacaagacttcctctccctcctctaccacactgctccgcactgat
aatggtatcaatctgggagtggcagcaggagcaggtccaggatcagctaacggaccaggc
caagaccctgtagctctgcaaagggcagtacagcagatagtcaggagtgagctgcagtcc
gatactgtacgagcaacacttgcacactcaatgaaaggagcgagaggagagcctgggacc
aaaggtgaccaaggtggtccaggagtcaaaggtgataatggattccctggcctaccaggt
cctccaggtcagatgggccacagtggactggagggcccgaggggacctaaaggaaatgca
ggtgaagctggtgcagagggccccccaggccagaagggccgagaaggaccaacgggatca
cgtggagagcctggtcctccagggtttggagagaaaggggacaaaggttctcctggtgaa
tccggagggcctggacctgctggcactgctgggcctgttgggcctaaagggtcagtgggt
ggtcagggtgctacaggtatcccaggaactcctggcccacagggtttccgaggtgaagca
ggcgctccaggaccgaaaggagagaagggagcagctggacctccaggaaataagggcgag
ccaggagagaaaggactccgcggaacatcaggtgacccaggtcaaagaggacctccggga
ccagacggcgcaaatggatctaaaggacctgcaggtgctcccggggctgacggtgaaaaa
ggctctagaggtgacaagggattggatgggttaccaggtcccaggggaccagcaggacct
ccaggagattcaggcctcccaggcattgctgggcttcaaggtccaccaggtataccaggt
aatccaggtcagcctggaggtaaaggcgaagctggagaacctggtagaatcatcaatgca
gctggttccagttcggttgccatccccggacctccaggcagccccggacccactggtgtt
tccggatcccctggactctcaggtcctgttggccctgctggtcttcctgggacgcctggt
cccaggggagaaaggggagaggaaggagagaagggagaccagggaaagcctggtattact
atacagactgtggaaaccacagagagacgtgcacctgtggctagtcttcctggcccacct
ggccctccagggcccccaggagaaccaggtccccagggtcttctaggtaagggtccccca
ggtcctgaaggtcctcaaggagtgccaggtgtaccaggtgttggtgtgcccggcccccga
ggagataagggagagccaggtagctttgtgccaaactcaggaaccttcttcgctgggccc
ccaggacctgctggcccaactggtctaccgggatcaccaggaccccagggttaccaaggt
gacccaggtcagcccggtttaccaggagttccaggagatcccggtgtcggtttccctgga
ccccagggacaacctggaggtccaggaccagaaggggacagtggacctccagggccccaa
ggtccagagggccccgagggacaaccgggtccaaaaggtgaggctggcgttccaggtgct
ccaggtatccctggctactccagtggtggatcatccaggagttcccttggagcaccaggt
ccacctggacctcccggggctcccggccgtgatgggccacctgggtctgggtctggaaca
ccggacgtccgccaatacatcacagaatacctcaagagcgatggtgtcagggagtacatg
tcgggacctccgggtcctccgggtgtaccggggccccctggtgacggatcagtggagtca
gtggacgatcttgctagtcgcgttatcgcgtacatccagagtggaggtattgctagtggg
gtgcctggacctccaggcccgcctggcgctcccggtggaggcagcacatcgctaaatgac
atcatcagccttctacagagtgaggaagtgcgacgctatgtcatcggtcctcctggccct
gctggacctcctggcatcccagggatcccatggagaggaggctatggctttaatacccat
gaggtggctggacgggtcctcactctaatgaatgatgctgaatacagaggtgccttgggc
gctcaggggtctcctggtccacctggtgtcccaggccctgctggccctcaaggccctgcc
ggtccttcaggacaggccccctacagcggctctggatacaggctggaggaggtcaaggac
tacatacagagtggtctaagagggggaatgtttgggcccccaggccccccaggtccccct
ggacctcagggacacaagggagagcagggtaactctgggtacggccacgcctttgaccac
aggaccagcgagggaagaaggctggctgagactgagacagacttctccaatatagcggtc
cgagtgactgactacatcaagtaccatggtctgttgagggacgtggttgagaaccggtca
cagctggagaagtcacaggttgttcaaggacccccaggaccccctggccctccaggattc
agccgtgtgtttggttcccatagtaacgtcactgaccttatggaatacatcagagcccat
gggaacatggtgggaccccctggaaggccaggacagaaaggggacataggacatacaggt
cacaaaggcgagagaggactggatggcatcccaggaaggacaggcctccctggtctggag
tggaaaaggggggggagggggagaaaggcgaatacacacttgtga
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