Oncorhynchus masou masou (cherry salmon): 135538017
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Entry
135538017 CDS
T10723
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135538017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135538017
03036 Chromosome and associated proteins [BR:
omm03036
]
135538017
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
135538017
Coactivators
SAGA/TFTC/STAGA complex
135538017
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
135538017
STAGA complex
135538017
TFTC complex
135538017
SAGA complex
135538017
SLIK complex
135538017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
NBCH_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
RMC1_N
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_like
WD40_RFWD3
PEP5_VPS11_N
Beta-prop_WDR75_2nd
PROPPIN
WD_LRWD1
Nbas_N
Beta-prop_ELP1_1st
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
135538017
NCBI-ProteinID:
XP_064820083
LinkDB
All DBs
Position
5:complement(25781080..25785033)
Genome browser
AA seq
618 aa
AA seq
DB search
MVLYYLIFSEVMKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQT
ESGCANIVSAAPCQADSQQYETQFSRLRNFLSEAVLPWGQEVSCVLYPLFVYLHLDMVRC
SLKGAVDGFYSRFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLALLDHKYVVNLTEP
AYSYLLRYLQSEDNSTLCRALSTHIQVEVTSSPRTDYQLYGTPGAGATGATTTAPNSTTS
WSGADGPERGEAAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLL
NTAEVSADSKLLAAGFDSSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGS
GSEIKTLRGHSGPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDMD
VSPCSLYFASGSHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVR
LWSTQQGASVRLFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTD
SVTSLSFSPDSSLVASSSMDNSVRVWDIRNTHSTTHADGSSSELVGLYTGNTSNVLNVQF
MACNLLLVTGTAQEKHGQ
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggtgttatactatttaatattttccgaggttatgaagcgggtacgcacggagcagatc
cagtacactgtagctcagtacctgaagcggaggcagtatgtggacactgaaagttccctg
aagggggctaaactgtcccagtccgcagaggagatggctgccaacctcacagtgcagaca
gagtcggggtgtgcaaacattgtctctgctgccccttgccaagctgactctcaacagtac
gagacccaattttccagacttcgcaattttctttcagaagcggtgttgccatggggccag
gaggtgagctgtgtcctgtacccactcttcgtttacctccacctggacatggtgcgctgc
agcctgaagggggcggtggatggcttctacagccgcttccacagcctcttcctgggggac
gccgagcagcgctccaccgtggagcagcttcgccatgtcctcacccagcaggatgtcacc
gccaaccccaagctcctggccttactcgaccacaagtacgtggtgaacctgacggagccg
gcctacagttacttgttacgctacctgcagagcgaagacaacagtaccctctgcagggcc
ctcagcacccacatccaggtagaggtcacctcctcaccacgcaccgactaccagctgtac
gggacgccaggtgcgggagctaccggggccaccaccacggcccccaactctaccacctcg
tggtcgggtgcggatggccctgagcgaggagaggcggcgggggtggaggtccccacaggg
atcccgcagagcgaggcggccctggaggcactgcaggactgcattaagaaggtgcgggag
gggccgccgtcactcaccaccgtgtgcttctatgccttccagcacacagagcagctactg
aacacggcagaggtgtcggctgacagcaagctgctggccgccgggttcgacagctcggcc
gtcaaactatggagtcttagggccagaaaactgaaggccaggccacaccggaccgacgtg
tcacacatccgcctagcatgtgacgtgctggaagaggaggcagatgaagaggacggctcg
ggcagcgagatcaagaccctgcgtggccacagcggtccggtgttccgcacagccttcctg
acagacagctcgggcctgctgtcctgctcggaggacacgtccattcgctactgggacctg
ggcagcttcaccaacacggccctctaccagggccacgcctaccccgtctgggacatggac
gtcagcccctgcagcctctactttgccagcggctcccacgaccgcaccgcccgcctctgg
accttctccaggacctaccctctgaggctctacgccggccacctagcggacgtggactgc
gtcaagttccaccccaactcaaactacctggccacaggctcaacggataaaaccgtccgc
ctctggagtacccagcagggggcgtcagtgcgcctgttcacaggccaccgcggccccgtg
ttgtctgtagccttcgcgcccaatgggaagtacctggcatcggcgggcgaggaccaacgg
gtgaagctgtgggacctggcctcaggggctctggtcaaggacctgaggggccacacggac
agtgtcaccagcctgtcgttcagccccgacagcagcctggtggcctcctcttccatggac
aactcagtcagggtgtgggacatccgaaacacccacagcacaacccacgcggatggctcg
tccagcgagctggtggggctctacacaggcaacaccagcaacgtgctcaacgtccagttc
atggcctgtaacttgctcctggtgacgggaacagcgcaggagaaacatggacagtag
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integrated database retrieval system
