Oncorhynchus masou masou (cherry salmon): 135539273
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Entry
135539273 CDS
T10723
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
135539273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omm04121
]
135539273
Enzymes [BR:
omm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135539273
Ubiquitin system [BR:
omm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
135539273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_2
zf-B_box
zf-C3HC4
zf-C3HC4_4
zf-RING_5
ANCHR-like_BBOX
U-box
Motif
Other DBs
NCBI-GeneID:
135539273
NCBI-ProteinID:
XP_064821180
LinkDB
All DBs
Position
5:28428648..28445353
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AA seq
673 aa
AA seq
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MADKMFSLMSLEDELSCSICLCAFDCPVTIPCGHNFCQACLLETWKDNYSCPQCRTHFTT
KPVLKKNTVLSTVVETFKMKSNKSDLPNEMGDLIKWDAVKMEPKEVVILCDTCMEAKAFK
TCLTCMASFCLEHVRPHHENPVFGAHQLNEPLGDLCDRICPDHHKLMEFYCVQHGRCICG
VCLQQVHKGCTFSNPDEQRALQESDLRGKLCLLDGKIDKNQTVISQMSDQQSKLKDSAAS
RKRALEDDYRQIRELLDRDEREALNTVDREQESGQTKLQNLIKKFNQNIVKLSAAKDGVN
SLLSRTQTVAFLQASVDMPAVVAFDPYTPKVNLDSKAVAAWHAYSAVLREHLTHVLKQPV
EARLQILKPAERFAPLLPNFYEMGGMPPPGHLRMPRSHSPGAPLRANQKKPPQDSNRERK
SDKKRDHKEWKEHKADKNSQKPPNAPRESATPVPHTPRDHPRGQSAEPRTRNREDPGQAS
VPPSITSAAKRNDLLRYGTVLTLDPKTAHKRISLTENMTMASVSDEPTPYPDGPARFSVC
SQVLTSKGFSRGRHYWEVKMSSNNFTGIGLAYNSIDRKGPASRLGRNAQSWCVEWFNVKL
SAWHASSETVLQNPNPIRVGVLLDCEEGTATFYNVQDRAYPFHTFVFQFAEAVYPAFWLF
SSGSSVSLCKLQS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaaatgttttccctcatgagtctcgaagacgaactgagctgtagcatctgc
ctatgtgctttcgactgtccggtgacaattccatgtggacacaacttttgccaagcgtgt
ctcctagaaacatggaaagacaactacagctgtccacaatgccggacccacttcaccacc
aaaccagtgctgaagaagaacaccgtcctcagcactgttgtggaaacgttcaaaatgaag
tcgaataaaagcgacctccccaatgagatgggcgacttaatcaagtgggatgcggtcaag
atggagcccaaagaggtggttatcttgtgcgacacctgtatggaagccaaagcattcaag
acctgcctcacgtgtatggcgtcgttctgccttgagcacgtgaggcctcatcatgagaac
ccagtgtttggcgcgcatcagctgaacgagcctctgggcgacctgtgcgaccgtatctgc
cccgaccaccacaagctgatggagttctactgtgtccaacatggccgctgtatctgtggt
gtctgtctgcagcaggtgcataaaggctgtaccttctccaaccccgatgaacaacgggca
ctgcaagagtctgatttgaggggcaagttgtgtctgctggatggaaagattgacaagaac
cagacagtcatctctcagatgagtgaccagcagagcaagttgaaggactctgcagccagc
aggaagagagcgctagaggatgactaccgccaaatccgggagctgctggaccgtgacgag
cgtgaggctctgaacactgtggaccgtgagcaggagagcggtcagaccaaactccagaac
ctcataaagaagttcaaccagaacattgtgaagcttagcgcagcaaaagatggcgtcaac
agcctgctcagtcggactcagaccgtggctttcctacaggcctcagttgacatgccggca
gtggtggcctttgacccctataccccgaaggtgaacctggactctaaggccgtggcagcc
tggcatgcctactctgcagtcctgagggagcatctcacacatgtactgaaacagcctgta
gaggccagactgcagatactcaaaccagctgagagatttgctcctctgctgccaaacttc
tatgaaatgggaggtatgccaccaccaggtcacctgagaatgcctcgatcccacagccca
ggagctcccctcagggcaaaccagaagaagcctccacaagattcaaaccgagagagaaag
tcggacaagaaacgagatcacaaggaatggaaagaacataaggctgacaaaaattcccaa
aagccacctaatgctcccagagagtccgccactcctgttccacacacaccaagggaccac
cccagaggacaatccgcagaacccagaaccaggaacagggaggacccaggacaagcaagt
gttcccccaagtatcacgtctgcagcaaaacgaaatgaccttctacgatatggcaccgtt
ctcacccttgaccccaaaacggcccacaagcgcatctccctgacagagaacatgaccatg
gcctctgtgtcagacgagcccaccccttaccccgatggccccgcccgcttctccgtctgc
agccaggtgctcacttccaagggcttctcccgcggccgccactactgggaggtcaagatg
agcagcaacaacttcaccggcatcggcctggcctacaacagcatcgaccggaagggtccg
gctagccggctggggcgtaacgcccagtcctggtgcgtggagtggttcaacgtcaagctg
tcggcctggcacgccagcagtgagactgtactgcagaacccgaatccgatccgcgtcggc
gtgcttttggattgtgaggagggaacggccactttctataacgttcaggaccgggcatac
cctttccatacgtttgtgttccagttcgcggaggcagtgtacccggcattctggctcttc
tccagcggctcgtctgttagcctgtgcaagctgcagtcttaa
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