Oncorhynchus masou masou (cherry salmon): 135539359
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Entry
135539359 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
135539359
3'-5' decay
Other 3'-5' decay factors
135539359
BRITE hierarchy
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135539359
NCBI-ProteinID:
XP_064821260
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Position
5:complement(29373776..29437299)
Genome browser
AA seq
1994 aa
AA seq
DB search
MADRRAEKSCEEASGSLARREYEAAVSHCTDALLALGPPAPPSPGPPASNAPNDTVTPLR
SRALLYRIAALLQLKNYDQADEDCKHVLAEELAKGDESFQASLRCMLLDGSLHEVAGLLS
KSLFGEPLNGIVTKDLTRLKMLLSEIEAIRSEMVTEYTDDNEEEVRDGWQFRPPPRGVTS
SEEYTLCKRFLEQGLCRYGAQCTSAHSREELMEWQKRYASRLIRLKQQQESKHFTENYME
ALIEKWMNSLSPEKVLSDYLDGVSVEHSSNLSVTVTTKKSAHSWTFSLFCKPVRKLYRIA
LLYDAHRPHFSITGVSVGDAGAQRLQAAAEGCQEWTAGEEALAANNGMDHCVYTVVVGFS
TEIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDPSCKTIV
EFSPNETVDLDRSLLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEEIAQYKE
VSKFNIKVNLQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSV
LLLPLARQEWCSQPPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDRELQVELQF
QLNRLPLCEMHYALDRIKDNGILFPDTSLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAI
TTPLTIPLPPVLIIGPYGTGKTFTLAQAVKHILKQDDSRVLICTHSNSAADLYIKDYLHP
YVEAGNAHARPLRVYFRNRWVKTVHPLVQQYCLISNTQYTFQMPEREDILRHRVVVVTLS
TSQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFALASKSTRIVLAGDHMQLSPFVYSE
FSRERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIISYTSELFYDGKLMASGKQPS
HKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVV
SPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKE
QLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEKFISICHE
NASLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPQPAQHPHHHQHHHQHPQGH
TAIKQPQQQQPQQSPPKGKGQHANHTDHFPPEGFVQPNPAVLMGNPIRAFTPPLGGTPGG
MGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPSVPIQLPWPGYQNRFAMDPRIMS
HQAAMAYNLNLLQAQNRGSPIPYGGVTHPSPLGQQTSPDKELQADSVRNGKMDGCAKSEQ
SRLQTPERKTSEMKDKQGECDPGGGRGLDSQTDGLGFPNAMLHRKDNSSQRPLNYHLAPP
NPAFAPHPVGRAFPPQYPGVSRLPFRVPTQHPGGSPGMGQPNQHHSAQLSPAYASGSHNP
SFFGGTMASHRGVPETEEEGPEEIGNSIRSQMGHQVGHHPALSQPSRVNSFGEENQEGGL
GDGMDSLTLEALSQQARLGQWGEPGPFLQGGVAFPLPQQLAHLAQPGLARFPPQLLARAN
WRMSAGMEDEAGGPPFTRFPGLLREMPPQDQPDPRDPVEMQPPPQSRLLQYRQVQSRSPG
DPSSPSSVTSNQTGPFPPGPYPGRDPTSHELELLNNPGLHQHPGNQLYNPNAYPHQLGHS
TTPPPQVKYLLQEAQWPHGGAGVAQNHMLAQGQGFPYGLPVMAHPSRQEQVHLMQLHHQQ
QQHQQQQQQQGQGPGQEPYHPLSPRTTGATALHNVEEYEPRGPGRPLYQRRISSSYPDEG
SPPTAAAQQQPQPCPPDPQEHPHTHQHPHQHPHAPYGYPPPELWPGNGGGPGPFQNIPCN
GASTLIQHRDLLVASKALRQAAEEQMKAEAAAAVAAAQPPAHSLQHLGQFPPLMPNSKPQ
QQQQQATPEPGQGSGGPQNPGKPPTMSYASALRAPPKPRARPEQVKKHSDPLSLLQELSI
GSSNGSNGYYSYFK
NT seq
5985 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagcagagaagtcatgtgaagaagccagcggatcgttagccaggagg
gagtacgaggcggcagtgagccactgcacagatgcgctgctggccctcggccccccggcc
cctcccagccctggaccccccgcatccaacgcccccaacgacacggttacccccctccgc
agccgcgccctgctctacaggatagccgccctgctacagctgaaaaactatgatcaagca
gatgaagactgcaaacatgttctggctgaggagctggccaagggagacgagtcgtttcag
gccagcctgcgctgcatgctgttggacggcagcctgcacgaagtggccggcctcctctcc
aagtccctgtttggggagcctctgaacggcatcgtcacaaaggacttaactagattaaaa
atgcttctctcagaaattgaagccattcgtagcgagatggtcacagaatatacagacgac
aacgaggaagaagtacgggatggatggcagtttcgccccccgcctagaggagtcaccagc
agtgaggagtacacgctgtgtaaaaggttcctggagcagggcctgtgtcgctacggtgcc
cagtgcacgtcggcccactcccgggaggagctgatggagtggcagaagcgctacgcctcg
cgcctcatccgcctcaagcagcagcaggagagcaagcacttcacggagaactacatggag
gcgctcatcgagaagtggatgaactctctctcccctgagaaagtgctgagtgactatttg
gatggcgtcagcgtggaacacagctccaacctctccgtaacggtcaccaccaagaaatca
gctcactcctggaccttctccctgttctgcaagcctgtgaggaagctgtaccgcatcgcc
ctgctctacgacgcccaccgaccccatttctccatcacgggcgtgtcggtcggcgatgcc
ggtgcccagcggctgcaggcggcggccgagggctgccaggagtggacggcgggcgaggag
gcgctggcggccaacaacggcatggaccactgcgtctacacggtggtggtgggcttcagc
accgagatcttcggcaccttccgccagaccatagtcttcgactttggctcggagcccgtg
ctgatgcagcgcatcatggtggacgccgcctccatagaagacctggagcacctaatgcaa
gccaggcagcagctcctaatgacggccaagcgctgggacccgtcctgcaagaccatcgtg
gagttcagccccaacgagacggtggacctggaccgcagcctgctggcccgctaccagatc
cccctgtcggccgaccagctcttcacccagtcggtgctggacaagaccctgacccgggac
aactaccaggcccgcctgcacgacctgctctacatcgaggagatcgcccagtacaaagaa
gtcagcaagttcaacatcaaagtcaacctccagctggtcactagcttcatgctgacgggc
atctcgggtggcgccaagtatgcccagaacgggcagctcttcgcccgcttcaagctgacg
gagacgctgtcggaggacacgctggcgggccgccttgtcatgaccaaggtgaactctgtc
ttgctgctgcccctggcccgccaggagtggtgcagccagcccccgggggtcaaggagcgg
gtctacgaggcctgcatcgaggagaagaccaaggactacatcttcctgcggatatgcaag
gactgctgcgaggagctgggcttgatacccgatagggaactgcaggtggagctgcagttt
cagttgaaccgcctgcccctgtgtgagatgcactatgctctggaccgcatcaaagacaac
ggcatcctgttcccagacaccagccttacccccaccattccctggagccccaacaggcag
tgggacgagcagctggacccgcgtctcaacgccaagcagaaggaggccatcctggccatc
accacgcctctgaccatccccctgccccctgtgctcatcatcgggccctacggcacgggc
aagaccttcaccctggcacaggccgtcaagcacatcctcaagcaggacgatagcagggtc
ctcatttgcacccattccaacagtgcagctgacctgtacataaaggactaccttcatcca
tacgtggaagcgggcaacgcacacgcaagacctctcagggtatacttcaggaaccgctgg
gtgaagactgtccacccgttggtgcagcagtactgtctgatctctaacacacagtacact
ttccagatgcccgagagagaggacatcctccggcaccgcgtggtggtggtcaccctcagc
acctcccagtacctctgccagctggacttggagccagggctcttctctcacatcctattg
gacgaggcggcccaggccatggagtgtgagaccatcatgcctttcgcgctggccagcaaa
agcacccgcatcgtgctggctggagaccacatgcagctcagtccgtttgtgtacagcgag
ttttctcgagagcggaacctgcatgtgtcgctgttggaccggctgtacgagcactaccca
gccgagttcccctgccgcatcctgctctgtgaaaactaccgctcccacgaagccatcatc
agctacacgtcagaactgttctacgatgggaagctgatggccagcggcaagcagccgtct
cacaaggacttctacccgctgaccttcttcacggcgcgcggcgaggacgtccaggagaag
aacagcacggcctactacaacaacgcagaggtgtttgagatcgtggagcgggtggaggag
atgcgtaagaagtggccggtggcgtggggcaagctggacgagggcagcatcggcgtggtg
tcgccctacgccgaccaggtattccgcatccgcgccgagctccgaaagaagaggatgcac
gaggtcagcgtggaacgggtgctcaacgtccaaggcaagcagttccgggtgctcttcctg
agcactgtgcgcacacggcacacctgcaagcacaaacagacggccatcaagcggaaggag
cagctggtggaggactcgacggaggacctggactacggcttcctgtccaactacaagctg
ctcaacacggctatcactcgcgcccagtccctggtggccgtggtgggagaccccatagcg
ctctgttcggtgggccgctgcagaaagttctgggagaagttcatctccatctgccacgag
aacgccagtctgcacggcatcacctttgagcagatcaaggcccagctggaggcccttgag
ctcaagaagacctacgtgctcaacccgctggcgcccgagttcatcccccgcgccctgcgg
ccccagccggcccagcacccccatcatcaccaacaccatcaccaacacccccagggacac
acggccatcaagcagccccagcagcagcaaccgcagcagtctcccccgaaggggaaaggt
caacatgcgaaccacacggatcacttcccacctgaaggatttgttcaacccaaccccgcg
gtgttgatgggcaaccccatccgggcgttcacgccgcccttagggggcacacctggcggc
atgggcaagtcccccagtcccgtgcagaggatagacccccacacgggtgccagcatcctc
tacgtgcccgccgtttacggaggaaacatggtcatgtccatgccactgccctctgtcccc
atccagttgccgtggcccggctaccagaaccgctttgccatggacccacgcatcatgagc
caccaggcggccatggcctacaacctgaacctgctgcaggcccagaaccggggctcgccc
atcccctacggcggagtcacacacccctcccccttgggccagcagaccagtcccgacaag
gagcttcaggctgattccgtcagaaacggtaaaatggacgggtgtgcaaagtccgagcag
agtcggctgcagacaccagagaggaagacctcggagatgaaggacaagcagggagagtgt
gatccgggcggtggccggggtctggactctcagacggacggactgggcttccccaatgcc
atgctccaccgcaaggacaactcaagccaaagacccctcaactaccacctggcgcccccc
aacccggcctttgccccccatcccgtgggtcgggccttccccccacagtaccccggcgtg
tccaggctcccctttagggtgccgacccagcacccaggtgggagcccaggcatgggccag
cctaaccagcatcactcggcccagctatccccagcctacgccagcggcagccacaacccc
tccttctttggtgggaccatggcctcccacaggggtgtgccggagactgaggaggagggg
ccggaggagattgggaattccatcaggtcccagatgggccaccaggtggggcaccacccg
gccctgtcgcaacccagccgagttaacagcttcggagaggaaaaccaggaaggaggcctg
ggagatgggatggattccctaactctggaggccctgagccagcaggcgcggctgggccag
tggggtgagcccgggcccttcctccagggcggtgtggccttccctctgccccagcagctg
gcccatctggcccagcccggcctagcccgcttcccccctcagctgctggcacgggccaac
tggagaatgagcgccggcatggaggacgaggctggcggaccgcctttcactaggttccca
ggcctcctaagagagatgcccccccaggatcagcccgatcccagggacccggttgagatg
cagccccctccccagtcccgcctgctccagtaccgccaggtccagtcccgctccccggga
gacccctcctccccctcgtctgtaacctccaaccagaccggccccttcccccctggcccc
tatcccggccgagatcccaccagccacgagctggagctcctcaataacccgggtctccat
cagcacccggggaaccagctctacaaccccaacgcctacccccaccagctgggccactcc
actaccccgcccccgcaggtcaagtacctcctccaggaggcccagtggcctcacggcgga
gctggcgtggcccagaaccacatgctggcccagggccagggcttcccctatgggctgccc
gtcatggcccaccccagtagacaggagcaggtccacctcatgcagctccaccaccagcag
cagcagcaccaacagcagcagcagcagcagggtcaaggcccaggccaggagccctaccac
cctctctcccccagaacaacaggtgccaccgcccttcacaatgtagaagagtatgaaccc
aggggtcccgggcggcccctctaccagcggcggatctcctccagctacccagacgaggga
tccccgccaacggccgccgcccagcagcagccacagccctgcccgccagacccccaggag
cacccccacacacaccaacacccccaccaacacccccacgccccctacggctaccccccg
cccgagctgtggcccggcaacgggggcggccccggcccgttccagaacattccatgcaac
ggagccagcacactcattcaacaccgggacctcctagtagcttccaaggccctgcggcag
gcagcagaggagcagatgaaggctgaagcagcagcagcagtagctgcggcccagcctccc
gcccactccctccagcacctcggacaattcccccctctcatgcccaacagcaagccacag
cagcagcagcagcaggccaccccagagcctggccaaggctctgggggcccccaaaaccct
ggcaaaccccccaccatgtcctacgccagtgccctccgcgccccacctaaacccagagct
cgtcccgaacaggtcaaaaagcacagcgacccactttccctactccaagagctgagcata
ggaagttcaaatggtagcaacggatactattcctattttaaatga
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