Oncorhynchus masou masou (cherry salmon): 135539618
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Entry
135539618 CDS
T10723
Name
(RefSeq) homeobox protein SIX5-like
KO
K19553
homeobox protein TGIF2
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
135539618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135539618
Transcription factors [BR:
omm03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
135539618
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
135539618
NCBI-ProteinID:
XP_064821681
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All DBs
Position
5:43148217..43157353
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AA seq
481 aa
AA seq
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MKSFKRVLEEERMRAQELSAMSDSDPFEDDSSTLDLSGGGGGSGKRRRRGNLPKVAVQVL
RSWLYEHRFNAYPSEQEKLSLSDQTSLSVLQICNWFINARRRLLPDLLRKDGKDPTQFTI
SRRAGKGEGSPTTGGFGSSPESPNSVHSPALPPLRPSVIRPAPTLDLSLLGNTATAILLG
AGYASQEGYCVQALMQLDMQSLLRREAEENGSKVISASPTGGLFNTPPPTPPELCPCQDF
SDLRLLVDAALQRAAEHESQSLLPEYQSRATAEATGGCSHSSSAMGPTTPPAQSQATFDS
PREQSPANKAVVSPDSVLIHVPVCSAPKLAMASVPAPNVPPRQAQMPVMVPVSTPFPTVV
PASTPISTKPLLPIPGANLCPTSVPAPSSTQVPTLTSVLTPAQPLAPAPPALNPFLGLAS
LQPLSSSIPNSSVQRAQSVPSVWSVVHSDVTVRQPVPVAQTPMAAVWGPQHTLRTVSETV
N
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccttcaaacgagttctggaagaggagcggatgcgagcgcaggagctgtcagcc
atgtctgacagtgacccctttgaggatgacagctccacccttgacctgtctggagggggt
gggggctcgggcaagaggcgtcgccgtggcaacctgcccaaggtggcggtgcaggtgctg
cggagctggctgtacgagcaccgcttcaacgcctacccctcagagcaggagaaactcagc
ttgtcagatcagaccagcctttctgtgctgcagatatgcaactggttcatcaatgcccgc
cgccgcctcctccccgaccttctccgcaaggatggcaaagaccccacccagttcaccatc
tccaggcgggcggggaagggcgagggcagcccaaccactggaggattcggcagttcccct
gaaagcccaaactcagtccactctccagccctgccccctctcaggccctctgtcatccga
ccagcccccacactggacctcagcctcctgggaaatactgccactgccatccttttgggg
gctggctacgccagccaagagggctactgtgtccaggccctgatgcagctggacatgcag
agtctcctgaggagggaggccgaggagaatggctccaaggttatcagcgccagccccact
ggcgggctattcaacacgccgccccccacgcctccggagctgtgcccctgccaggatttc
agtgacctgaggttgctggtggatgcagctctccagagggccgccgagcacgagagtcag
agtctgctcccagagtaccagagcagggccactgcagaagcgacgggtggctgtagtcac
agcagcagtgctatgggtccgaccactccaccagcgcagagccaagctacgtttgactcg
cccagagagcagagtcctgcgaacaaggcggtggtgtccccagattcagtcctaatccat
gtcccagtctgttctgcacctaaacttgccatggcctctgtaccggctccaaatgtgcct
ccccgccaagcccaaatgccagtcatggtgccagtttcaaccccctttccaaccgttgtc
ccagcttcaactccaatctcaaccaaaccccttctcccaatccccggtgcaaacctttgc
ccaacctcagtcccagctccaagctctacccaggtcccaaccctaacctctgtcctaacc
ccggcccaacctttagccccagcaccaccagccctcaacccattcctgggcctggcctcc
ctccagcccttgtcctcctccatccccaacagcagtgtccagagggcccagtcggtgccc
agtgtttggagtgtggtccacagtgatgttacagtccgacagcctgtccccgtggctcag
actcccatggccgccgtgtgggggccacagcacaccttgcgcactgtcagtgaaaccgtc
aactag
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