Oncorhynchus masou masou (cherry salmon): 135539760
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Entry
135539760 CDS
T10723
Symbol
pbrm1l
Name
(RefSeq) polybromo 1, like isoform X1
KO
K11757
protein polybromo-1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
135539760 (pbrm1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135539760 (pbrm1l)
03036 Chromosome and associated proteins [BR:
omm03036
]
135539760 (pbrm1l)
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
135539760 (pbrm1l)
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
135539760 (pbrm1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
135539760
NCBI-ProteinID:
XP_064821928
LinkDB
All DBs
Position
5:50072883..50111355
Genome browser
AA seq
1641 aa
AA seq
DB search
MSSKRRRATSPSSSSVSGGDFDDASSSTPGSGRKRRIPSNVPTVDPIAVCHEVYNTVRDH
KDDQGRLLCELFIRVPKRRKQPDYYEVVSQPIDMTKIQQKLKSEDYQDVEQLTADFQLMF
NNAKTYYKADGVEYQEACRLWELYVHTRNEFVQPGDGDEDDDDGEDILDNRALFTEDETP
PSCLKEVLEQLLDAVVSYTDPSGRVISELFQKLPSKVHYPDYYAVIKEPLDLRAITQRIQ
IGYYKSVTGMAKDVDLLVKNAKTYNEPGSQVFKDANIIKKVFIQRKTEIDHAEPTKTSVR
IKNRRSAQGDRFSAITLALQYGSENDEDALLSGSVHYDEGESEAECLSSSMDMGNPVFQL
YEAVRGGRNSQGPLLSEPFLQLPSRKEYPDYYQQIKHPIALQQIREKMKNGEYESVEQMD
SDLTLMFENAKCYNVPTSGISKRALRLQQILLLKKRELLRRGDEEEQDSILSSDTGTGSA
TKRKSHKKNMKNRMKALYAAVTEAREPGTNRRLCDLFMVKPSKKDYADYYKVILEPMDLK
TIEHNVRSKRYATEEALMDDMRLMFRNARHYNEEGSQVYNDAGILEKIVKDKRKELGASH
EEDTDNMGSPKLKLRKSGVSPKKSNKCLTPLQQRLNELYDAVRNYTDARGRRISTIFLRL
PSRAELPDYYATIKRPIDMERLRSHMAGGRYQDVDALVEDFAVMFNNACTYNEPESLIYR
DALLLHRVLLDTRRLQEGGEEGGGSPPAVGPVVMELIRNLFVSVLAHQDEEGRCYSDSLA
EIPAQDPTSPENPPLNFDVIRANIDRGRYRRLDVFQEHMFNVLEKARRLHRTDSEIFEDA
VELQQFFIKIRDELCKNGEILLSPALSYTSKHLHNDVEQEKREKVPKEIEEDKLKREEEN
KEEGEKAEDPAGGGAGPERTYRQDCSFENRTYHVGDCVYVQPAEANLKPHIVCIERLWED
EAGEKWLYGCWFYRPSETFHLATRKFLKQEVFKSDYFNKVPVSKILAKCMVMFVKDYFKL
QPEGVRPEDVYVCESRYSARNKAFKKIKMWAGPAGVRFVPRDVPLPVIRVASMYAKRDQE
KLLAVADNGSHSIVDKELEDVPVEMSGGEPGCQYYDQLHNNNMWLKVGDCVYVQSHGLVK
PRVGRIEKLWVRDGAAFFFGPIFIHPEETGHEPTRMFYKREVFLSNVEEACPMTCVIGKC
VVSSFKDYLSCRPTEVSEEDVFLCESRYIESEKQMKKFKGLKRFSLHAKVVDDEVYYFRK
LIVPQKEPSPLLNKKIEELELKLADMDQGDEDLDDLEDEDEAPETPSMPTIQTPLASDLD
IMPYTPPPQSTPKAKGVSKKEGAKRKVNMSGYILFSSEMRSVIKTRHPDFSFGELSRLVG
TEWRNLEAPKKVEYEERAARVVERQEKERAAQQQASPRAGTLVGSMMGVVPSPSHMGMMP
GPGMMGAYGPPYGMPMQGPHEGLLGMGPMPPHHMGPMPPQHLQPGMPGYHPGMPYPGMMG
PGMNGMQGSPGGHYYMQQPGMFSPGQQAPPPYPGQLGQPSHLQPMTPMFVAPPPKTQRVL
HSEAYLKYIEGLNAETDTVSKWDQSLKARRRDAHLSKDQESRLPSHWLKSKGAHKTMADA
LWRLRDLMLRDSLNIRQAYNM
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgaaaaggagaagggccacctctccatccagtagtagtgtgagcggaggggac
tttgacgatgcctcctcctccactcctggaagcgggcgaaagaggagaataccctctaat
gtccctacggtagatcctattgctgtgtgccatgaggtgtacaacactgtcagggaccac
aaggatgaccagggaagactgctttgtgagctgtttatcagggtaccaaagagaaggaaa
cagccagactactatgaggtggtgtcccagcccatagacatgaccaagatccagcagaag
ctcaagtcagaggactaccaagatgtggagcagctcactgctgatttccagctcatgttc
aacaacgccaagacctactataaggcagatggtgtggagtaccaagaggcctgcaggctg
tgggaactctatgtccacaccaggaatgagtttgttcagccaggggatggtgatgaagat
gacgacgatggtgaagacatcctagataatcgtgctctcttcactgaagatgagacccca
ccgagctgcctgaaggaggttttggagcagctgctagatgctgtagtgtcatacacggac
ccctcaggaagggtcatcagtgagctcttccagaagctgccttccaaagtgcactaccca
gactactatgccgttatcaaggagccccttgatctgagagccatcactcagagaatacag
atcggatactacaaaagtgtcaccggcatggctaaggatgttgaccttctggtgaaaaat
gcaaaaacatacaatgaaccaggatctcaggtttttaaggatgctaacatcatcaagaag
gtcttcatccagagaaagactgagatagaccatgctgagcccactaagaccagtgtccgc
atcaagaaccggaggtcagcccagggagaccgtttctctgccatcaccctggcattgcaa
tatggctcagagaatgacgaggacgccctgctctctggctctgtgcattatgacgagggt
gagtctgaggcggagtgcctgagctccagtatggacatgggtaacccagtgttccagctg
tatgaggctgtgaggggaggcaggaacagccagggaccgctcctttctgaacccttcctc
cagctgccctccaggaaagaataccctgactactaccagcagatcaaacaccccatcgcc
ctgcagcagatcagggagaagatgaagaatggggagtacgagagtgtggagcagatggac
tctgaccttactctgatgtttgagaatgccaagtgttacaacgtgcccacctcaggcatc
tccaaacgggccctccggctgcagcagatcctgctgcttaagaagagggagcttttgagg
agaggtgacgaagaggaacaggacagcattctgtcctctgacacaggaactggcagtgcc
accaagaggaaaagccataagaagaacatgaagaaccgtatgaaggcactgtatgctgca
gtgactgaagccagagagccagggaccaaccggaggctctgtgatctgttcatggtcaag
ccctccaagaaggattacgcagactactacaaggtgatcctggagcccatggaccttaag
accatcgagcacaacgtccgctcaaagcgctacgcaaccgaagaagccctgatggacgac
atgaggctgatgttccgcaatgcacgtcactacaacgaggagggatctcaggtttataac
gacgctggcatcctggagaagatagtgaaggacaagaggaaggagctaggagcttctcac
gaggaggacactgacaacatgggatctcctaagctcaaactaaggaagagtggtgtgtct
cctaagaagtccaataagtgcctgacccccctgcagcagcgcctcaacgagctgtatgac
gctgtgaggaactacacagacgccagggggcgacgtatctccaccatcttcctgcgcctg
ccctcccgtgccgagctgcctgactactacgccaccatcaagaggcccatcgacatggag
cgcctgcgcagccacatggcgggaggccgataccaggacgtggatgcactggtggaagac
tttgcagtgatgttcaacaacgcctgtacctacaacgagccagagtccctgatctaccgt
gacgctctgctcctccaccgcgtgctcctggatacccggcggctgcaggagggaggggag
gagggcggcggctctccccctgctgtagggccagtggtcatggaactgatcaggaacctg
tttgtgtctgtgctggcgcaccaggacgaggaggggaggtgttacagcgactcactggct
gagatccctgcccaggacccgaccagcccggagaatcctccgctcaacttcgacgtgatc
cgggccaacatagaccgaggacgctaccgtaggctggacgtgttccaggagcacatgttc
aatgtgctggagaaggccaggcgcctgcacaggacggactctgagatctttgaggatgcg
gtggagctgcagcagttctttataaagatccgggatgagctctgtaagaacggagagatc
ctcctctcccctgcgctcagctacacctccaaacacctgcacaatgacgtggagcaggaa
aagagagagaaagtacctaaggagatagaggaggacaaactgaagagggaggaggagaac
aaagaggagggagagaaggctgaggacccagctgggggaggtgcggggccagagaggaca
taccgtcaggactgcagctttgagaacagaacctaccacgtgggtgactgtgtctacgtg
cagccagccgaggccaacctcaagcctcacatcgtctgcatcgagcgcctgtgggaggat
gaagcaggtgagaagtggctgtatggctgttggttctacaggcctagtgagacctttcat
ctagccacacgcaagttcctcaagcaagaggtcttcaagagtgactacttcaacaaagta
ccagtcagcaagatactggcaaaatgcatggtcatgtttgtcaaggattacttcaagctt
cagcctgagggagtaagaccagaggacgtgtacgtctgtgagtcccgttactctgccagg
aacaaggccttcaagaaaatcaagatgtgggccgggccagccggcgtgaggtttgtccct
cgggatgtgccgttgcccgttatccgggtggcctccatgtatgccaaacgtgatcaggag
aaacttttggccgtggccgataacggcagccacagcatcgtcgacaaggagcttgaggat
gtcccggtagagatgagtggaggggagccaggctgtcagtactacgaccagctccacaac
aacaacatgtggctgaaggtgggagactgtgtctacgtccagtcacatggtctcgttaaa
ccccgtgtcggcaggatagagaagctgtgggtgcgcgatggcgcagcatttttctttgga
cccatcttcatacacccagaggagacgggacacgagcccaccaggatgttctacaagaga
gaggtgttcctcagcaacgtggaggaggcctgccccatgacctgcgtcataggtaaatgt
gtggtgtcgtcctttaaggactacctgtcttgtcggcccactgaggtgtctgaggaggac
gtgtttctgtgtgagagccgttacattgagagtgagaagcagatgaagaagtttaagggc
ctgaagcgcttctccctccacgctaaggtggtggacgacgaggtctactacttcaggaag
ttgatagtgccccagaaggagccgtctcctctgctgaataagaagattgaggagctggag
ctgaaactggcagacatggatcagggggatgaggatctggatgacctggaggatgaggac
gaggctccagagaccccctccatgcccaccattcagactcctctggcaagcgatttggac
atcatgccttatacccctcctccccagtccactcccaaggcgaagggtgtgtctaagaag
gaaggagccaagaggaaggtcaacatgagtggttatatcctattcagcagtgagatgcgt
tcggtcatcaagacccgccaccctgatttctccttcggggagctcagccgtctggtgggc
accgagtggaggaacctggaggctcccaagaaagtagagtatgaagagcgggcagccagg
gtggtggagcgtcaggagaaggagagggcagcccagcagcaagcatccccgagagcaggt
accctagtagggtccatgatgggggtggtgccttcgcctagccacatgggaatgatgcct
ggtccaggcatgatgggagcttacggccccccctacggcatgcccatgcagggcccccat
gagggcttgctgggtatgggcccaatgccacctcaccatatgggcccgatgcccccccaa
cacctccagccaggtatgcctgggtaccaccctggcatgccctacccgggtatgatgggt
cctggtatgaatggcatgcaaggaagtcctggaggccactactacatgcaacagcctggg
atgtttagcccggggcagcaggctcctccaccctacccaggccagcttggccagccctct
catctccagcccatgactcccatgtttgtggctccaccgcccaagacacagagggtgctt
cactctgaggcctacctcaagtacattgagggcttgaacgcagagacggacacagtcagc
aagtgggaccaatctctcaaagcgcgtcggagagatgcccacctgtccaaagaccaggag
agcaggctcccttcccattggctgaagagcaagggagcccacaagacgatggcagatgca
ctgtggcgcctgcgggacctgatgcttcgagactcactgaacatacggcaggcgtacaac
atgtaa
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integrated database retrieval system
