Oncorhynchus masou masou (cherry salmon): 135539946
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Entry
135539946 CDS
T10723
Name
(RefSeq) collagen alpha-1(VII) chain-like isoform X1
KO
K16628
collagen type VII alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135539946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
DUF4992
fn3_2
zf-DPOE
Motif
Other DBs
NCBI-GeneID:
135539946
NCBI-ProteinID:
XP_064822290
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All DBs
Position
5:58039647..58136717
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AA seq
2462 aa
AA seq
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MQSQSFSRNTTISDLSGLQPSTEYVITLFTLYEGREEATPVSTSPTVEQPVGRVSNLRVV
EYLGSTVRLGWTGVAGATQYRILMVNTEAQTEETRSIPGSQTTLDLRGLTEGVSYGVSVT
AVVGDSEGDPVTVYIKAEQALERVTNLRVTNTNGRRLRIAWTEVSGATGYRVTWRQGNNA
EQSRVLGPEASSYTVEGLQPDTAVVLGVAAVIGQRIGEVVTLSARTNGNNGSSTVSGLRI
IDVTSQRIRIRWSPVSRATGYKITWRSGNGVESSRTVAADVTSFTIDSLQEDSSYRVSVS
SLIGSREGYPTSLNTRTESDQLVVGTVTSLKAQESRGEVVRVTWVGVQGATAYRVAWKRI
DGGEERSQLVGGDLTAVDLEQLDPGAQYEVQVMALVQNREGSPVSVRVTTPGEPVAVDRV
EGVRVLEATPRVLRLVWRGMAGVTGYRIYWRSALGEAESSRLIGRDATSFDLDGLRPGVS
YTMRLAAIFRDRESQAVTITASTAPLQPVTRLRVAEVTQNSVLLGWVPLTGATGYILRWK
EERDTGPGQSTTLPGSSSSYRVTGLRLGLRYRFTLQPNFQREVGLETSVDERTVCVGGRL
DVVFLVPASRDRASLADSLLSLLTSAAGSLTTIGERDSQLGIVVYSARPKVWFLLNRHSN
SETLLQEILSTPFEDGPGNAIGQAMTFTRQFLLSPTAGRRPRVPGAVVIIADEKSSDNIT
VPASVVKASGVTVLAVGIGRADSEELRQAVTDGSTQNLLYARDATQLGTLHADLADLLCG
VARIPEGVGPVTEQCTVQCPRGDRGERGGKGESGRDGADGRKGEPGRDGLPGREGPRGPE
GRQGQPGRSEDPSVGVRGEKGERGFPGLDGNPGLPGRPGTPGPGGVQGSQGLPGVRGDPG
DPGVTGTPGTKGDRGDRGEPGSAVSGGGLPGRKGEPGIPGIPGTLGRPGNDGAKGFVGPA
GTPGQDGRPGIPGTPGLSIKGDKGSTGERGPPGVGSGLAVKGEKGSPGSDGNPGAQGLRG
STGQQGAKGDKGESAEGLPGLAGKAGEPGDRGPRGPAGSIGLKGDRGQPGEPGSQGDRGE
RGLAGLAAERGESGQPGSTGAPGLRGLPGTSGLPGEKGSEGAKGEPGRSGPGLGGKKGEQ
GEPGLPGPEGPRGQKGDPAQKGEKGSPGTGSPGQAGSKGEQGDRGLSGLAGRLGIKGDSG
EPGERGETGRAGPAGKNGIPGKEGAKGDKGDEGTPGESGLPGKAGERGLRGLAGQPGRAG
EKGDLGDPGEHGRNGSPGPIGPRGEKGVEGAQGRPGPPGKVGDIEQKLKGERGEKGDAGD
PGEHGGKGQKGEAGSSGAAGLRGLEGQRGPPGSRGDTGERGGPGEKGERGASGLDGRNGL
DGKPGAPGAAGLRGDPGKLGDPGRDGLPGLRGVQGLPGPIGPAGNPGTPGKAGEDGKPGA
AGKMGEDGVPGEDGRKGDKGEAGVSGRDGRDGLKGDRGLGGPAGPTGLSGPQGVPGTIGP
PGLVVYAKGAPTPSIPGPQGPPGNPGVPGIPGTAGARGERGAVGSKGERGDPGEDGQPGR
PGTAVDVQKALSNLGIEMQDLKVLVDNRNVPGKSVLEKAEKGQRGDKGEAGQRGPAGIDG
ARGLSGERGVKGEQGERGPVGATGPTGRAIGEKGPVGPTGQAGEPGKPGIPGVPGRAGEL
GEAGRPGDKGERGEKGDKGEAGKNGLGGSVGPPGPKGAAAVAGESGLPGARGLPGVTGPK
GEPGASGPQGSKGDRGIAGIRGDKGDRGPSGEQGRDGFQGTAGEPGKPGQDGKPGPQGPA
GPQGRSGNPGEPGIRGPTGAIGTNGPPGPSGVKGNQGVPGVGVQGLPGPEGNMGVRGPAG
PPGAVGPSGPPGLPGQTGEGGKPGVPGRDGIPGKEGTPGLPGKQGIAGPMGSAGLKGEQG
DSGPPGKAVAGPPGMKGAQGPPGVTLPGTVGESGLPGLRGERGDKGPAGIKGDRGAAGEN
GEPGEDGGRGPAGPKGDRGERGIGLAGPPGQLGPQGLNGDTGLPGPAGPPGAQGVAGTPG
LAGLRGENGTPGPPGPLGPRGIQGFTGQTGTPGAPGPPGPSGLAGSPGTAGGKGDKGAIG
AGVPGLRGERGDPGPRGEEGRGGQNGERGLAGSPGGKGGRGDKGELGLQGGKGEKGDTLL
VGGPIGEKGNKGETGDRGPKGVQGEKGLKGNDGPAGEQGLRGEPGDRGSTGFQGARGPGG
QKGEAGQPGVPGESGTPGKDGMPGFRGDKGDVGITGMRGIKGDRGSKGACGSDGPKGEKG
DSGIHGRSGLPGRKGEQGDLGPPGAIGTPGKEGLIGPKGDRGIDGVLGPKGMQGEKGERG
PSGIPGPPGPTGVDGASGLTGPQGPAGAKGPEGLQGQKGERGPIGPAKIGPRGIPGIPGE
RGGQGELGLDGAKGDRGEPGLTEDEIRAYVRTEMSQHCACGGEWAQSDTWTRWFKCNSSS
SL
NT seq
7389 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtcagtcattctccaggaacaccactatttctgatctgtcagggctgcagccc
agcactgagtatgtcatcaccttgttcaccctgtatgagggacgagaagaggccaccccc
gtctccacctctcccacagtggaacagccggtggggagggtgtccaacctgcgagtggta
gagtacctgggcagcactgtgcgactgggatggacaggggtagccggggcaacgcagtac
cgtatcctcatggtcaacactgaagcgcaaacagaggaaacccgcagtatccctggaagc
cagacgacccttgaccttaggggtctgacagagggcgtgtcttatggggtcagcgtgaca
gctgtggtgggagacagtgagggggacccagtcactgtctacatcaaagcagaacaagca
ttggagagagtgacaaacctgcgtgtgacaaacaccaatggtcggcgactccgaatcgcc
tggacagaggtttccggggcgacagggtacagggtcacttggagacaaggcaacaatgcg
gagcagtcccgtgttctggggccagaggcctcgtcctacacggtggaggggctgcagcca
gacacagctgtggttctgggcgtggcggctgtgattggtcaacgtatcggggaggtggtc
accctctcggccaggaccaatggcaacaatggctcaagcacggttagcggcctgcgtatc
attgatgtcacctctcagaggatacgcattagatggtcaccagtctccagggcaactggc
tacaagattacctggcgcagtggaaatggagtggagtcctcccgcacggtggccgctgat
gtcacttccttcaccatcgacagccttcaggaagactcctcctaccgggtctcagtctcc
tcactgattgggtctcgggaaggataccccacctccctgaacaccagaacagagtcagac
cagttggtggtgggaacagtgacttcactcaaagcccaagagtcccgcggtgaggtcgtc
agagtaacatgggtgggcgtgcagggagcgacagcctatcgtgtggcttggaagcgaatt
gacggtggggaggagaggagccagctggtaggtggcgacctcacagcggtggacctggag
cagctggacccaggggctcagtatgaagtgcaggtcatggccctggttcagaacagagag
ggatccccagtctctgtcagagtcacaacacctggggaacctgttgctgtggaccgtgtg
gagggggtcagggttctggaggctaccccaagggtgctgcgtctggtctggagaggaatg
gctggggtcacagggtaccgcatctactggagatcagccctgggtgaggctgaatcgagc
cgtctgataggtcgagatgcaacctcgtttgacctggatggtctgcggcctggggtgagc
tacacaatgaggctggctgccatcttcagggacagagagagtcaagctgtcactatcaca
gcctccacagctcccctacagcctgtaacacgtctgcgtgtggcagaggttacccagaat
tctgtgttgttaggctgggttccactgactggtgccacaggatatatcctgcgctggaaa
gaggagagagatactggtccgggtcaatccaccacgctgcctgggtcatccagctcctac
agggtgacagggctacgtctgggcctgagataccgcttcaccctgcagcccaacttccag
agggaggtgggccttgagacctcagtggatgaacgcactgtgtgtgtgggtggtcgtctc
gacgtggtattcctggttccagcttccagggaccgggccagcctggctgattctctgctc
tccctcctgaccagcgctgctggctccctcaccaccattggagaacgggactcacagctg
gggattgtagtgtacagcgcccgacccaaggtctggttcctgctaaatcgccatagcaac
agtgagacgctgcttcaggagatcctgtctacgccttttgaggatggcccagggaatgct
ataggccaggcaatgacgttcaccagacagttccttctcagccccacagctggtcgtaga
cccagagtccctggtgcggtggtgatcattgcagatgaaaaatcctccgacaacatcact
gtcccagccagtgttgtcaaagcctcaggagtgacggtgctggcggtgggtataggtagg
gcggactctgaggagctgcgccaggcagtgacagatggcagcacccagaaccttctatat
gcccgtgatgccacccagctgggcaccctacacgccgacctggctgacctgctgtgtggc
gtcgccaggataccagagggagtggggccagtgacagagcagtgtaccgtacagtgtcct
cggggtgaccggggggagcgaggaggaaagggagagagtggaagagacggtgctgacgga
cgcaaaggagagcctggtcgtgatggtttgcctggcagggagggccccagagggcctgag
gggcgacagggtcagcctggccgaagtgaggacccctcagtgggggtcagaggggagaag
ggggagagggggtttcctggtctggatgggaatccagggttgccagggcgaccagggacc
ccaggccctggaggtgtgcagggttcacaggggctaccgggtgtcagaggagatcctggt
gatcctggggttacaggaacaccagggacaaagggtgacaggggcgacaggggtgagcca
gggtcagctgtttcaggaggaggtctgcccgggaggaaaggggaaccagggatcccagga
ataccaggtaccctagggcgtccagggaatgatggggccaagggctttgtgggacctgca
gggacccctggacaggatggtcgcccagggataccaggcacccccggcctctccattaag
ggagacaagggcagcaccggagagaggggacctccaggagtgggcagtggcttggctgtg
aagggagagaagggatcaccggggtctgatggaaacccaggagctcagggtctcagagga
tctacaggacaacaaggagccaaaggagacaagggggagagtgcagaggggttgccagga
ctggctgggaaggcaggagagcctggtgatcggggtccccgtgggcctgctgggagcatt
ggactcaagggggaccggggccagccaggtgagcctggatcacaaggtgacaggggggag
agaggacttgctggcttggcagcggagaggggggagagtggacagccaggctctacaggg
gctccaggcctgaggggtttgcctggcaccagtggattaccaggagagaagggcagtgag
ggcgctaaaggagaacctggccggagtgggccaggattaggtgggaagaaaggtgaacag
ggtgagccgggtctgccaggtccagaggggcccaggggccagaagggcgatccagcccag
aaaggtgaaaaaggttccccaggtactggctctcctggccaggctggatctaaaggagag
cagggggatcggggactctctggcttagctggaagactggggatcaagggagattcaggt
gaaccaggagagagaggggagacaggacgagccggacccgcaggaaagaatggcatccca
gggaaagagggagccaaaggagacaagggtgatgaaggcactcccggggagtctggactc
ccagggaaggcaggggagagaggactaaggggccttgcgggtcagcctggacgagcagga
gagaagggagacctgggagaccctggagagcatggacgtaatggcagcccaggacctatc
ggaccaagaggagagaaaggagttgagggagctcaaggccgcccaggacctccagggaag
gtgggcgatatagagcaaaagcttaaaggagaaagaggagaaaagggagatgctggtgac
ccgggagagcatgggggcaaaggtcagaagggcgaggcagggtcctcaggggctgcgggg
ctcaggggtctcgagggacagcgtggacctccagggtcgagaggtgacacaggagagaga
ggaggcccaggagagaagggagagagaggtgcgtctgggctggatggacgcaacggtctg
gatggcaaaccaggggcaccaggagcggccggcctgaggggagacccagggaaactaggg
gatccaggaagagatgggctgccaggactaagaggtgtacagggcctcccaggccctatt
gggcccgctggaaatccaggcacacctggcaaagcaggagaagatggaaaaccaggggct
gctgggaaaatgggtgaggatggcgtaccaggggaagatggcagaaagggtgacaaagga
gaggctggggtttctggaagagacggccgtgatgggctgaagggggaccggggccttggc
gggcctgcagggccaactggtctatctgggccccaaggggtccctggcaccatcggacct
ccaggactggtggtctatgcgaagggagctccaacaccatctatccctggccctcagggg
cctccaggaaacccaggtgtgcctggaatcccagggaccgcaggagctagaggggagaga
ggagcagtgggcagtaaaggtgaaaggggtgacccaggagaggacgggcaaccaggcagg
cctggaacagcagtggatgtgcagaaggccctctctaaccttggcattgagatgcaggac
ctgaaggtgcttgtggataacaggaatgtgccaggcaagagtgtgctggagaaggctgag
aagggccagagaggagacaagggagaggccgggcagagaggaccagcagggatagatggt
gcccgcgggctatctggggagaggggtgtgaagggagagcagggggaacgggggcctgta
ggggccacaggacccacagggagggccattggagagaagggcccagtaggacccacggga
caggctggagagccaggaaaacctggaatacctggagtaccagggagagccggagaactg
ggagaggctggacgacctggagataagggggagagaggagagaagggtgacaaaggagag
gctgggaaaaacgggctaggtggctcagtgggccctcctggaccaaagggtgctgctgca
gtagcgggtgaatctggactacccggagcaaggggcctccctggggtcacaggaccgaag
ggagagcctggcgcctcagggccacagggatccaaaggcgacaggggtattgcagggatc
cgtggagataaaggtgatcggggtccatctggagaacagggacgcgatggttttcagggg
acagcaggagaacctggcaaaccgggacaggatgggaagccgggtccacaagggccagct
ggtcctcaaggccgctcaggaaaccctggagaacctggaattagagggccaactggtgcg
atcggtaccaatggacctccaggtccgtcaggggtaaagggtaatcaaggagtgcctggg
gttggcgttcagggacttcctggtcccgaaggcaacatgggagtgcgtggacctgcaggg
cctcctggagctgtgggtccatctgggcctccaggtctaccagggcagacaggggagggg
ggcaagccaggggtcccaggaagagacgggatacctggaaaagagggaacaccagggttg
ccagggaaacagggtatcgctggaccaatggggtccgcggggttgaagggggagcagggg
gacagtggccccccaggaaaggctgttgcaggaccccctggtatgaaaggagcacaggga
cctcctggtgtgaccttacctgggacagtgggagagagcgggctgccagggctacggggt
gagaggggagacaagggtcctgcaggcatcaaaggggaccggggagctgctggtgaaaat
ggggagcctggagaagatgggggcagaggaccagcagggccaaaaggagacaggggagag
agaggcatcggactggcagggcctcctggtcagctgggacctcaagggttaaatggggac
acaggtctcccgggcccagcaggccctccaggagcccagggcgtagcagggacccctggt
ctggccggccttagaggagagaatggaactccaggacccccaggacctctaggacccagg
ggtatccaaggctttactggtcagacagggactcctggagctcctgggccacccggaccc
tctggcttagctggttcaccgggcactgctggaggcaaaggggataagggagcgattgga
gcgggagtacctggattgagaggcgagagaggagacccaggacccaggggggaggagggt
cgaggtggtcagaacggggagagaggactagcgggctctccaggtggcaaaggaggcagg
ggagataagggtgaattggggctgcaaggtggcaaaggagaaaagggtgatactctcctg
gtgggaggacctataggagagaaaggaaataaaggagagacgggtgaccgagggcccaaa
ggggtgcagggggagaaaggcttgaaaggcaatgacggcccagctggggagcagggtctg
aggggtgagccaggagacaggggctctacagggttccagggagccagaggtccaggagga
cagaagggagaggcgggacagcctggtgtacctggagaatcaggtacaccaggaaaggat
ggaatgccaggctttagaggggataagggagacgtgggaataactggaatgcgtggaatt
aagggcgaccgaggatcaaagggggcttgtggatcagacggaccgaaaggagaaaaggga
gattcggggatccatgggaggtcagggttgcctggaaggaaaggtgaacagggagacttg
gggcctccaggggccattggaacccctggcaaggagggtctgatcggccccaagggtgac
cgaggcattgatggagtactaggacccaaaggaatgcagggagagaagggcgaaaggggc
ccctcgggtatccctggccctccgggccccacaggagtggacggggcctctggactgaca
gggcctcaggggcccgctggagctaagggcccagaagggctccaaggacagaagggggag
agggggcctattggtcctgccaagattggtccacgtggtatcccaggtataccaggagaa
agaggcgggcagggggagttgggtctagatggagccaagggagacagaggagagccaggc
ttgacggaggatgagattcgtgcatacgtccgcacagagatgagccaacactgtgcttgt
ggaggtgagtgggctcagtctgacacgtggactaggtggtttaagtgcaatagcagtagt
tcgctttga
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