Oncorhynchus masou masou (cherry salmon): 135540388
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Entry
135540388 CDS
T10723
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135540388
04518 Integrin signaling
135540388
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135540388
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135540388
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135540388
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
135540388
NCBI-ProteinID:
XP_064823077
LinkDB
All DBs
Position
5:83352184..83455696
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATHVVLLAVVKCQDEDQDVGSCMQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRGGEAPPSGAPGAKGQKGEPGDITDVVG
PRGPGGPLGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
SLGPRGPPGPSGKPGDDGEAGKPGKGGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLSGPAGPPG
PVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDTGPQGKVGPGGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGSPGEKG
DAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGSTGIKGDRGNTGPAGAPGSPGANGSPG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQSGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVYPKPASIPKKNWWSSKSKAAKHIWFGETMNGGFHFSYGDESLAANTASIQMTF
LRLLSTEANQNLTYHCKNSVAYMDGVTGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMEDG
CTKHKGTWGKTVIEYRSQKTSRLPIVDIAPVDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctttgtggattcgaggactgtactgctacttgtagcaacccatgtcgttcta
ttagctgttgtcaaatgtcaggacgaagaccaggacgtaggcagctgtatgcaggacgga
cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgacgaaataatctgcgaggagattaaagactgccccaaaccc
gagatcccattcggagagtgttgccccatctgcgtgcggggcggggaagcccccccaagt
ggggcccccggagctaagggtcagaaaggggaaccaggagatatcacagatgtcgtagga
ccaagaggacctggaggccctttgggccccccaggagagcagggaccacgtggagacaga
ggagacaaaggcgataagggcagccccgggccccgtggcagagatggtgagcctggtacc
cccggtaaccctggcccccccggacctccaggacctaacggaccccctggccttggagga
aactttgctgctcagatggcgggaggattcgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatggggcctatgggtcctcgaggaccacctggaccttctggagct
cctggtccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc
tcgttgggtccccgtggtccacccggaccctctggtaaacctggagatgatggtgaggct
ggcaaacctggcaaaggtggtgaacgtggaccttctggtcctcagggagctcgtggattc
ccagggacccccggtctgcctggaatcaagggccacagaggttatccaggtctggatgga
ctcaagggagagggtggagctgctggttctaagggtgagtctggtgctcccggtgagaat
ggcgctcctggaccaatgggaccacgcggtctgcccggtgagagaggtcgtcccggaccc
tctggttctgctggcgctcgtggtaatgacggtctgtctggccctgctggtcctcctggc
ccagtcggtcctgctggggctccaggcttccccggctctccaggttctaagggcgaagct
ggccccactggtgctcgtggacctgagggcgctcagggaccccgtggagagtcaggaacc
cctggatcgcccggacccgccggcgcatctggaaaccctggtactgatggtattggagga
tctaaaggatcggctggtgctcctggtatcgctggcgcgcctggcttccccgggccccgt
ggccctccaggaccccagggggccactggacctctcggaccaaagggaacatctggtgac
cccggtatcccaggtttcaagggtgaggctggacccaagggagagcttggaccagccggt
ccacaaggagcacttggccctgcaggagaggaggggaagaggggacccagaggagagccc
ggagctgctggacctcttggacctcccggagagagaggcgcccccggtaaccgtggtttc
ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagtcggcggc
gtgtccggccctaagggagccggtggtgaccctggtcgccctggcgagcccggtcttcct
ggcgcaagaggtcttactggtcgtcctggagatactggtcctcaaggcaaagttggacct
ggtggtgctgctggtgaggatggtcgccccgggccccctggccctatgggagcccgcggt
cagcctggtgtgatgggattccccggacccaagggagccaacggtgagcctggaaaagga
ggcgaaaaggggcttcttggtgccccgggtctgaggggtcttcctggaaaggatggtgag
actggagctgccggacctcctggccctgctggacctgctggagaaagaggagagcaagga
cagcctggaccttctggcttccagggtctgcccggacctcccggcccacctggtgagggg
ggcaagcccggtgacatgggtgttccaggagagggtggagctgctggtgccactggaccc
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
cctcgtggtctgcctggaactcctggaactgatggacccaagggagcgatcggaccaggt
ggcgcatcgggtgcccagggaccccccggtctgcagggtatgcccggagagcgaggggcc
tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgagggt
gcttctggcaaagacggctcaagaggtttgactggtcccattggtcctcccggcccagct
ggtcccaacggagagaagggtgaatctggtccatcgggaccttccggtgctgccggtgcc
cgtggtgctcctggagacaggggtgagaccggacctcctgggcctgctggcttcgctggg
cctcctggatctgatggtcagcccggagccaaaggagagcagggagagggtggtcagaag
ggagacgctggtgcccctggaccccagggaccctctggagctcctgggccttctggacca
actggtgtttctggacctaaaggtgctcgcggtgctcagggaccccctggtgccactggt
ttccctggcgctgccggcagagtcgggccccctggtcccaacggtaaccctggtgctgct
gggccctctggccctgctggtaaagatggccctaagggtgtgcgaggagacggtggaccc
ccaggcagacagggagacgctgggctgcgtggagccgctggatcccctggagagaaggga
gatgctggagaggatggtccctctggtcccgatggtccttcaggtccttcaggtctggct
ggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggcctg
ccaggaccctctggagagcctggtaaacaaggagctcctggtggtagcggagaccgtgga
cctcctggtccagtgggaccccctggactgactggacccgcaggagagcccgggagagag
ggcaacgctggttccgatggaccacctggtagagatggatccactggaatcaagggtgac
cgtggtaacaccggtcctgctggcgctcctggctccccaggagctaatggttcccccggc
cctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggacctgct
ggacctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagac
aagggtgaggctggagagggtggagagagaggacagaaaggacacagaggattcactggt
ctgcagggtctgcccggacctcccggtcaatctggagaccagggtgcctctggacctgcc
ggaccaagtggatcgaggggacctcccggacccgttggtccctctggaaaggatggttcc
aacggtatgcctggccccatcggaccccccggaccccgtggtcgctctggagagactggt
ccctctggtccccctggaaactccggtccccctggtcctcctggtcctcccggccctggt
atcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgagg
tacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgcc
acgctcaagtctctcaacaaccagattgagaacatccgctcccccgagggctccaagaag
aaccctgcacgtacctgcagagacctgaagctgtgccacccagactggaagagcggagag
tactggatcgaccctaaccagggctgcaccatagacgccatcaaggtctactgtaacatg
gagaccggagagtcctgcgtctaccccaagcccgccagcatccccaagaagaactggtgg
tccagcaagagcaaggctgccaaacacatctggttcggagagaccatgaacgggggattc
cacttcagctatggcgatgagagtctggcagccaacacggccagcatccagatgaccttc
ctgaggctcctgtccaccgaggctaatcagaacctcacctaccactgcaagaacagcgtg
gcctatatggacggggtcactgggaacctgaagaaggccgtgctgctccagggctccaac
gacgtggagatcagagctgagggcaacagccgctttacctacaccgttatggaggacggc
tgcacgaaacataaaggaacctggggaaagacagtgattgagtacagatcacagaagacc
agccggctgcccatcgtggacatcgctcctgtggatattggaggagcggaccaagagttt
ggtgttgacgtcggcgcagtttgcttcttgtaa
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