Oncorhynchus masou masou (cherry salmon): 135540447
Help
Entry
135540447 CDS
T10723
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135540447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135540447
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
135540447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
CSTF1_dimer
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_NUP159_NUP214
Beta-prop_VPS8
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_SPT8
Frtz
Motif
Other DBs
NCBI-GeneID:
135540447
NCBI-ProteinID:
XP_064823147
LinkDB
All DBs
Position
5:92085385..92103639
Genome browser
AA seq
431 aa
AA seq
DB search
MYRPKPTLRDRQHLYRLIISQLLYDGYTNIANNLITEVKPQSVVSPSENLMQLAKIGMEN
DDSAVQYAIGRSDTVAPGVGIDLEFDADVQSMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKVLDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKHVQEAEMLRAISFHPSGDFLLVGTQHPT
LRLYDVNTFQCFVSCNPLDQHTDTISGVNYNPNANSYVTCSKDGSIKLWDGVSNRCVMTF
DKAHDGAEVCSAVFSKNSKYVLSTGKDSVAKLWEISTGRPLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRSAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgtcccaaaccgacgctgcgggaccgacagcacctgtaccggctcatcatcagc
cagttgctgtatgacggttacaccaacatcgccaacaacctcatcacggaggtgaagcca
cagagcgtcgtgtcgccctctgagaacctcatgcagctggccaagataggcatggagaat
gatgacagtgcggtgcagtatgccatcgggcggtctgacacagtggcaccaggcgttggc
atcgacctggagtttgacgctgacgtccagtccatgtcccccgaggcgtctgagtacgag
acttgttacgtgacgtctcataagggtccctgtcgcgtggccacctacagccgggacggg
cagctcattgctacgggctccgcagacgcctccatcaaagtcttggacacagaacgtatg
ctggccaagagtgccatgcccatagaggtgatgatgaatgagacagcccagcagaacatg
gagaaccacccggtgatcagaacactgtacgaccacgtggatgaggtcacgtgtctggca
ttccaccccacggaacagatcctggcgtctgggtcacgtgactacaccctcaaactgttt
gactactccaagccctctgccaagagagccttcaaacatgtacaggaagcagagatgctg
cgtgccatctccttccacccgtcaggtgacttccttttggtggggacacagcacccgacc
ctccgcctctacgacgttaacaccttccaatgcttcgtctcctgcaaccctctagaccag
catactgacaccatcagtggagtcaactacaaccctaatgctaacagctatgtgacgtgc
agtaaggacggcagcatcaagctgtgggacggcgtgtctaaccgctgtgtgatgacattt
gataaggcccatgatggggcggaggtctgctccgctgtcttctcaaagaactccaagtac
gtcctctccaccgggaaagactctgtcgccaaactgtgggagatctccaccgggcgcccc
ctggtcaaatacacaggtgctggtctgagtggtcgtcagatgcatcgtacccagggtgtg
ttcaaccacacagaggactatgttctgctgcctgatgagagaaccatctctctatgctgc
tgggactcccgatctgcagagaggaagaaccttctgtccctgggtcacaacaacatcgtc
cgctgtatcgtccactcccccaccaacccagggttcatgacctgtagtgatgacttcagg
gcccgcttctggtacagacgtactaccaccgattga
DBGET
integrated database retrieval system
