Oncorhynchus masou masou (cherry salmon): 135540983
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Entry
135540983 CDS
T10723
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135540983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135540983
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135540983
Spliceosome [BR:
omm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135540983
Complex C
U5 SnRNP specific factors
135540983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Cache_WalK
Motif
Other DBs
NCBI-GeneID:
135540983
NCBI-ProteinID:
XP_064823210
LinkDB
All DBs
Position
1:27894038..27910849
Genome browser
AA seq
2137 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLVGTKMGDKSQRTK
PSMLEERRAKRRKRDEDRHDMNKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDDGSDEESEGEEADLGCTL
TANLGVTGDVMTAKKKELHPRDIDAFWLQRQLSRFYDDAIISQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMETDPDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGESMTPKQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVTIEKLPKYAQAGFEGFKTL
NRIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLVHTAA
NVLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
QNKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITP
MEALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVTDGTLKETLANGVGYLH
EGLSTTERRIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVIMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCMDKGVES
IFDIMEMEDEDRSGLLQLSDTQIADVARFCNRYPNIELSYEVAEKENIKSGGPVLVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGV
HNYTLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcacgtagcttgcagtacgagtacaaagcgaactccaacttggtc
ttgcaagcagaccgttcgctcattgaccgcacaaggcgtgatgagcccacaggagaggtg
ctgtccctggtggggaagttggtgggaaccaagatgggtgacaagtcccagaggaccaaa
ccttcaatgctggaggagagacgggcaaaaaggaggaagagagatgaggacaggcacgac
atgaacaagatgaagggcttcaccctcctgtcagagggcattgatgagatggtgggcatc
gtgtacaagcctaagaccaaggaaaccagggagacatatgaggtccttctcagcttcatc
caagctgcgcttggagatcagccgagagatatcctgtgtggagcggctgatgaggtgctg
gctgtgctgaagaatgataaaatgagggacaaggagagacggcgtgaagtggagcagtta
ctagggcctgcagatgacacacgctaccacgtgttggtcaacctgggcaagaagatcagt
gactacggtggtgacaaagagctccagaacatggatgacaacattgacgaaacatacgga
gtgaatgtccagtttgaatctgatgaggaggagggtgatgaggaccagtttggggaggtg
cgagatgatggctcagatgaagagagtgaaggagaggaagcagacttgggctgcactctg
acagccaaccttggcgtgacaggtgatgtgatgacagccaagaagaaggagctgcaccct
cgtgacatcgatgccttctggctccaacgtcagctcagccgtttctatgacgatgccata
atctctcagaagaaagcagatgaggttctggagatcctcaagacggccagtgatgaccga
gaatgtgagaaccagctggtcttactgttgggattcaacacctttgacttcatcaaaatc
cttcgtcagcatcgtcgcatgatccagtactgtaccatgttggcaagtgctcagagcgaa
gcagagaaggagaagatcataggaaagatggagacagatccagacttgtccaaagttctt
tatcagctgcaggagactgagaaggaggatattatcagggaagagcgatctcgcagggag
agagtaaggaagtctcgtgtggacaatgacttggagtctatggacatcgaccatggagag
tctatgacccctaaacagttgctggacctggaggacctggccttcacccagggaagccac
ttcatggccaacaagaggtgccagctgcccgatggctcctttcgcaagcagcgcaaaggc
tacgaggaggtgcacgtccctgcactcaaacccaagcccttcgctgacgatgaggtgctg
gtgaccattgagaagctgcccaagtatgcccaggcaggtttcgaagggttcaaaaccctg
aaccgcattcagagcaagctgttcaagactgctatggagaccgatgagaacctgctggtg
tgtgctcctacgggagcaggtaagaccaacgtggccctcatggctatgctaagagagatc
ggcaagcacatcaacctggacggaaccatcaacttggacgacttcaagatcatctatgtg
gctcctatgcgctcgctggtacaggagatggtgggaagctttagtaagcgtctggccagt
tatggcatcacagtgtctgagctgacaggagaccaccagctgtgtaaagaggagatcaat
gccacccaggtcatcgtctgcaccccagagaaatgggacatcatcacacgtaaaggaggc
gagcgcacctacacccagctagtgcgcctcatcatcattgatgagatccatctgctgcat
gatgaccgtgggccagtcctggagtctctggtggccaggaccatccgcaacgtggagctg
acccaggaggatgtgcgtctgctgggtctcagtgccaccctgcccaactacgaggacgtg
gccacctgcctgcgggtagaccccgccaagggactattctactttgacaacagtttccgt
ccagtgcccctggaacagacatatgtgggcatcactgagaagaaggctatcaagcgcttc
cagatcatgaacgaaattgtctatgagaagatcatggagcatgctgggaagaaccaggtg
ctggtgtttgtccactccaggaaggagacggggaagacggcccgggctatcagggacatg
tgtctggagaaagacaccctggggctgttcctgagggaggggtcagcctcaactgaggtc
ctcaggactgaggcagagcagtgcaagaaccttgagctgaaggacttgctgccctacggt
ttcgccatccatcatgctggtatgaccagagtggaccgtaccttggtggaagatctcttt
gctgatcgccacatccaggtgctggtgtccacagccacattggcctggggtgtgaatctg
cctgcacatactgtcatcatcaaaggcacccaggtgtacagcccagaaaaaggcagatgg
acagagctgggagccctggacattctacagatgcttggtcgagctgggcgtcctcagtac
gacaccaagggagagggcattctgatcacatcccatggggagctgcagtactacctatct
ctgctcaaccagcagctgcccatcgagagccagatggtgtccaagctgccagacatgctc
aacgctgagatagtgctgggcaacgtgcagaatgctaaggacgcagtgaactggctgggc
tacacctacctgtacgtgcgcatgctccgtaaccccaccctgtacggagtctcccatgac
gaccgcagctcggaccccctgctggagcgccgcaggatggacctggtccacactgcagcc
aatgtgctggacaagaacagcctggtcaagtacgacaagcggaccggcgctttccaggtg
acggatctgggtcgcatcgccagccacttctacatcacccatgactccatccagacgtac
aaccagctgctaaagcccaccctcagtgagatcgagcttttccgtgtcttctccctctcc
tctgagttcaggaacatcactgtcagagaggaagagaagctggaactgcaaaagctgctg
gagagagtccccattccagtgaaggagagcattgaggagcccagcgccaagatcaacgtg
ctgctccaggcttacatctctcagctcaaactggagggctttgctctgatggctgacatg
gtctatgtgacgcagagtgctggaagactgatgcgagccatctttgagatcgtcctgagc
aggggatgggcccagctcacagacaagaccatgaacctttgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgtcagttcaggaagctcccagaggaagtcatcaag
aagattgaaaagaagaacttccccttcgagcgcctctatgacctcaaccacaatgagatt
ggtgaattgatccgcatgcccaagatggggaagaccatccataagtacgtgcaccagttc
cccaaactggaccttgctgttcacctgcagcccatcacccgctccacactgaaggtggag
ctcaccatcacaccagacttccagtgggatgataaggtgcatggctcgtcagaggccttc
tggatcctggtggaggatgtagacagtgaggtcatcctacaccacgagtacttcctgctt
aaggccaagtacgcccaggacgagcacctggtcaccttcttcgtgcccgtgttcgagccc
ctacccccacagtacttcatccgcgtggcctcggaccgctggctgtcctgtgagacccag
ctgccagtatctttccgccacctgatcttgccagagaagtatccccctcctactgagctg
ctggacttgcagcccctgcctgtgactgccctgcgtaatgccgccttcgagaccctttac
cagaacaagtttcccttcttcaaccccatccagacacaggtgtttaacgctgtgtacaac
agtgatgacaacgtgtttgtgggagcccccaccggcagtgggaagaccatctgtgccgag
tttgccatcctgaggatgctgctgcacaacgcagagggacgttgtgtctacatcacaccc
atggaggctctggctgaacaggtgtttgttgactggcaccagaagttccaggatgctctg
aataagaaggtggtgttgctgacaggagagactagcactgacctgaagctcctggggaag
ggtgacatcattgtcagcaccccggacaaatgggacatcctgtcgcgccgctggaagcag
aggaagaacgtccagaacgtcagcctcttcatcgtggacgagactcacctcattggagga
gagaacgggcctgtgttggaggtgatctgctccaggatgaggtacatctcgtctcagatt
gagcgtcccatccgcatcgtggccctcagctcctccctgtccaacgccaaagacgtggcc
cactggctgggatgcagcaccaccgcaacctttaacttccaccccaacgtcaggcctgtc
cctctggagctgcacatccagggcttcaatgtgagtcacacccagactcgcttgctgtcc
atggccaagccagtgtaccacgccatcatgaagcactccccctctaaaccggctgtggtg
ttcgtcccgtcccgtcgacagacccgcctcaccgccatcgacatcctcaccttctgtgct
gctgatgtggtccctcagaggttcctgcactgcactgagaaggacctggctcccttcctg
gagaaggtgacagacggcaccctgaaggagacactggccaatggggtgggctacctgcac
gagggcctgtccactacagaacgcaggatcgtggagcagctcttcaactcgggtgcagtc
caggttgtagtggcttcacgctccctctgctggggcacaaacatatctgctcacctggtt
gttatcatggacactcagtactacaatggcaaaatacatgcctatgtggactaccctatc
tacgatgtactccagatggtgggcaaggccaaccggcccctgcaggacgatgagggacgc
tgtgtcatcatgtgccagggttctaaaaaggatttcttcaagaagttcctgtatgagccc
ctgccggtggaatctcacctggaccactgcatgcacgaccacttcaatgctgagatcgtc
accaagacggtggagaacaaacaggacgcagtggactacctaacctggaccttcctgtac
cgccggatgacccagaaccctaactactacaacctgcaaggcatgtctcaccgtcatctg
tccgaccacctgtcagagctggtggagaacaccctgcatgacctggagcagtccaagtgc
atcagcatcgaggatgagatggacgtggcacctcttaacttgggcatgattgctgcctac
tactatatcaactacaccactatcgagttgttcagtatgtccctgaacgccaagaccaag
atccgtggattgattgagatcatttccaatgctgctgagtacaagaacatccccatcaga
caccatgaggacaacctgctcagacagctggcccagaaggtgccccacaaactgaacaac
cccaagttcaacgacccccatgtgaagaccaacctgctgttgcaggctcacttgtccagg
atgcagttgagcgctgagctccagtcagacacagaggagatcctcagcaaggctgtgcgt
ctgatccaggcctgtgtagatgtgctgtccagtaatggctggctgagccctgcgctggct
gctatggagctagctcagatggtcacccaggccatgtggtctaaggactcctacctcaaa
cagctgccctacttcacctctgagcacatcaaacgctgcatggacaagggtgtggagagt
atctttgacatcatggagatggaggatgaggatcgtagtgggctgctgcagctctcagac
acccagatagctgacgtggctcgcttctgtaaccgctaccctaacattgaactgtcctac
gaggtggcagagaaggagaacatcaaaagtggaggtccagtgctggttttggtccagttg
gagagagaagaagaggtgactgggcccgttattgccccactcttcccccagaaacgtgag
gagggctggtgggtggtgattggagaccccaagtccaatagcctgatctccataaagagg
ctgaccctgcagcagaaggccaaggtaaagctggactttgttgcaccagtgctgggcgtt
cacaattacacactgtacttcatgagtgatgcctacatgggctgtgatcaggagtataag
ttcagcgtggatgtgaaggaggcagacagcgatggagacagtgattcagactaa
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integrated database retrieval system
