Oncorhynchus masou masou (cherry salmon): 135541905
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Entry
135541905 CDS
T10723
Name
(RefSeq) collagen alpha-1(VII) chain-like
KO
K16628
collagen type VII alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135541905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
DUF4992
fn3_2
zf-DPOE
VWA_3
Motif
Other DBs
NCBI-GeneID:
135541905
NCBI-ProteinID:
XP_064824471
LinkDB
All DBs
Position
6:32321260..32430246
Genome browser
AA seq
3017 aa
AA seq
DB search
MMINGNRMQLSSVSSLLAKFLNAYVNKVVKMWSWVFPVAVLLSSVHQAEAQGRCNNVGAA
DIVFLIDGSSSIGRANFLQVKGFMAGIVKPFTSSVGQSGIRFGAVQYSDTSRVEFTFTTY
LNGTELVSAVENLNYKGGNTRTGAGLKFVADNFFNPTSIRNVSKVCILITDGKSQDNVRD
PAQKLRSLGVEMFAVGIKSADQTELALIATPPQRDYTFFVGDFKLLNTLLSLVGPRVCSS
SGGVYASDEAFSGPSNLQFSSQTSDSLRFRWTPAGGPVSGYVVQYTPLSGLGQPITAELR
QETVSAGQRSFVARELKSGTDYLVTIIAQYPNSVGEPVSAKSRTKSLPGVSGLRLVQAGF
FSLSLGWDAPTSQIQGYRLTYGPRGQPAAQLLEQSLAADSTSVTLERLLPDTDYVLTLYP
LFPRNSVSPATLTSRTLRLEAAQQLSVETVSERSVRVLWRGVGGARAYRLVWGPFTGRDV
KSVEVAGDTETHTLLNLQPDTEYIVTVIALYEDNTEGPAATARFKIERLEQQVLKAATTG
PSSIRLTWNLIQSARGYRLEWRQGEGGRVQSQSFSQGTTSFDLTGLQPSTEYVITLFTLY
DGREEATPVSTSPTVEQQVGSVSNLRVVESLGSTVRLGWTGVAGATQYRILMVNTEAQTE
EIRSVPGSQTTLDLRDLTEGVSYGVSVTAVVGDNEGDPVTVYIKAEQALEKVTNLRVTNI
NGRRLRIAWAGVLGATGYRVTWRQGNNAEQSHDLGPEASTYTLEGLQPDEAVVLGLAAVI
GQRIGEVVTLSARTNGNTGSISSTVSGLRIVDVTFQRIRITWSPVSRATGYKITWRSEDG
VESSRTVAADVTSFTIDSLQEDSSYRVSVSSLIGSREGRPASLNTRTASDQGVVGTVTSL
QVQESRGEVVRVTWVGVQGATAYRVSWKRIDGGEERSQLVGGDLTAVDLEQLDPGAQYEV
QVMALVQNRQGTPVSVRVTTPGEPAAVARVEGVRVLEATPGVLRLVWRGMAGVTGYRIYW
RSALGEAESSRLIGRDATSFDLDGLRPGVSYTVRLAAIFRDRESQAVTITASTAPLKPIR
GLRAMEVTQNSVLLDWVPLPGATGYVLRWREERDTGPGQSIPLPGTSSSYRVTGLRLGLR
YRFTLQPSFQREVGPETSLDERTVCVGGRLDVVFLVPASRDRTSLVEPLLSLLTSAAGSL
TSIGARDSQMGIVVYSARPKVWFLLSRHSNSETLLQEILSTPFEDGPGNAIGQAVTFTRQ
FLLSPTAGRRARIPGVVVIIADKKSSDNITVPANAVKASGVTVLAVGIGRADSEELRQAV
TDGSTQNLLYARDTTQLGTLHADLADLLCGVARIPEGGGPVAEPCTIQCPRGDRGERGEK
GEIGRDGTDGRKGEPGRDGLPGRDGPRGPEGRQGLPGGSEAPSVGVRGEKGERGFPGLDG
GPGLPGRPGTPGPGGVPGSQGLSGIRGDPGDPGVKGASGTKGDRGDRGEPGSAVSGGGLP
GRKGEPGIPGLPGTTGRPGTEGAKGFVGPAGIPGQDGRPGIPGALGLSIKGDKGSTGERG
PPGVGSGSAVKGEKGSPGSDGYPGAQGPRGLTGQQGAKGDKGESAEGLPGPSGKTGEPGD
RGLRGPAGSLGVKGDRGQPGEPGSQGDRGERGLAGLLGERGESGQPGSTGAPGLRGLPGT
SGLPGEKGSEGAKGEPGRSGPGLGGKKGEQGEPGLPGLEGPRGQKGEPAQKGEKGPPGAG
TPGQAGPKGEQGDRGVPGLAGRLGTKGDPGDPGERGETGRAGPAGKNGLPGKEGAKGDKG
DEGTPGESGLPGKAGERGVRGLSGQPGRAGEKGDLGDSGAHGRNGSPGSIGPRGEKGVEG
AQGLPGPPGNMRDIEQKLKGERGEKGDAGDPGEHGGKGQKGETGPSGATGLRGLEGQRGP
SGARGDTGERGGPGEKGERGASGLDGRNGLDGKPGAPGPAGLRGDAGKLGDPGRDGLPGL
RGAQGLSGPIGPAGNPGTPGKAGEDGKPGTAGKMGEDGEPGEDGRKGDKGEAGAAGRDGR
DGLKGDRGLAGPTGPTGLSGTPGVPGTIGPPSQVVYVKGAPAPSIPGPQGHTGTPGEPGI
PGAVGARGEKGAVGGKGESGDPGEDGKPGRSGTAVDVQKALSNLGIEVQDLKLVMERRNV
LVKPVVEQAEKGQRGDKGEAGQRGPAGIDGARGLAGERGVKGEQGEQGPVGATGPIGRAI
GEKGPVGPPGQAGEPGKPGIPGVPGRAGELGEAGRPGDKGDRGEKGDKGEDGKNGLAGLV
GPPGPKGASAEEGQAGLAGARGPPGVTGPKGEPGALGPQGSKGDGGIAGPHGDKGDRGPS
GEQGRNGFQGTAGEPGKPGQDGKPGLPGFPGVLGRPGNPGEPGIRGSTGPIGTNGPPGPP
GVKGNQGVPGVGVQGLSGPQGSMGLPGPAGPPGAVGPSGPPGLPGQTGEGGKPGVPGRDG
IPGKEGTPGLPGKQGITGPMGSTGLKGEQGDSGPPGKAVAGPPGVKGAQGPAGVTLPGTM
GERGLPGLRGERGDKGPAGIKGDRGPAGENGEPGEDGGRGHAGPKGDKGERGIGLAGPPG
QLGPQGLKGDTGLPGPAGPPGARGIAGTPGLAGLRGENGTPGPPGPLGPRGLQGFPGQVG
TPGGPGPPGPTGLVGTPGTAGGKGDKGAIGAGVPGLRGERGDPGPRGEEGRAGLDGDRGL
VGSPGGKGGSGEKGELGPQGDKGEKGDTLLVGGPTGEKGNKGETGDRGPKGGQGEKGLKG
SDGPAGEQGLRGEPGDRGSTGFQGARGPGGQKGEAGLPGVPGESGTPGKDGMPGFRGEKG
DMGITGMRGIKGDRGSKGACGSDGPKGEKGDSGIHGRSGLPGRKGEQGELGSPGATGTAG
KEGLIGPKGDRGLDGVLGPKGAQGEKGERGPSGIPGPPGPRGVDGSSGLTGSQGPTGAKG
PEGLQGQKGERGPLGPAMIGPRGIPGKPGDRGKEGELGPDGAKGDRGEPGLTEDEIRTYV
RTEMSQHCACGGEWVSV
NT seq
9054 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcaatgggaacaggatgcaactgagctcagtttcgagtctcctagcaaagttt
ctgaatgcttatgtaaataaggttgtgaagatgtggagctgggttttccctgtggctgtc
ctgctgtcctcggtgcaccaggctgaagcccaaggcaggtgtaataatgttggagcagca
gacatagtcttcctgatagatggctcatcaagtatcggcagggccaacttcctgcaggtc
aagggcttcatggctggcatcgtcaagccctttaccagctctgtgggccaatcagggatc
cgcttcggggccgtgcagtacagcgacacctctagggtggagttcaccttcacaacctac
ctgaatggcactgagctggtcagcgctgtggagaacctcaactacaagggtggcaacact
cgcacaggtgccggcctcaaatttgtcgctgacaactttttcaaccccacctccatccgg
aacgtctcaaaggtctgtatactgatcacagatggaaagtctcaagacaatgtaagggac
ccagctcagaagctgcgaagtctgggagtggagatgtttgcagtgggtataaagagtgca
gaccagactgagttggctctgatagccactcctcctcagagggactacacattctttgtg
ggggactttaagctgctcaacacactgctgtccctggtgggcccacgtgtgtgttccagc
tcagggggagtctatgctagcgatgaggctttctccggtccctctaacctccagttctca
agccagacctctgattcgctcaggttccggtggactcccgcaggggggcctgtgagtggc
tatgtggtgcagtacacacccctttctggcctgggccagccaattacagcggagctgcgt
caggagacagtgtctgcaggtcagaggagctttgtggccagagagctgaagtcagggaca
gactacctggtgacgatcatcgcccaataccccaacagtgtgggagagcctgtctctgcc
aagtcacgaaccaagtctctaccaggggtgtctggtcttcgtctagtccaggctggtttc
ttctccctctctctgggctgggatgcccccacatcacagatccagggctatagactcacc
tacggaccccgaggtcagcctgcagcccagctattggagcagtctctggctgcagactcc
acctctgtcaccctggagaggctactgccagacacagattacgtcctcaccctatacccc
ctgttcccccgaaactctgtctcccccgccaccctcacctcacgcacattgcgtctggag
gcggcccagcagctgtcagtagagaccgtgtcagagcgtagcgtccgggtgctgtggagg
ggagtgggtggagccagggcctacagactggtctggggaccattcacaggacgtgatgtg
aagtctgtggaggtggctggcgacactgagactcacaccctgttgaacctgcagccagac
accgagtacattgtcactgtcatcgccctctacgaagacaacacagagggacctgctgct
accgccaggttcaagatagagcgtctggagcagcaggtgctgaaggcagccaccaccggg
ccctcctccatccgcctcacctggaacctaatccagtctgctaggggataccgcctggag
tggaggcagggggaaggtggcagagtgcaaagtcagtcgttctcccagggcaccactagt
tttgatctgacagggctgcagcctagcactgagtatgtcatcaccctgttcaccctgtat
gatggacgagaggaggccacccccgtctccacctctccaacagtggaacagcaggtgggg
agtgtgtccaacctgcgagtggtagagtccctgggtagcactgtgcgactgggatggaca
ggggttgccggggcaacacagtaccgtatcctcatggtcaatactgaagcgcaaacagag
gaaatacgcagtgtccctggaagccagacgacccttgaccttagggatctgacggagggc
gtgtcttatggggtcagcgtgaccgctgtggtgggagacaacgagggggacccggtcact
gtttacatcaaagcagaacaagcattggagaaagtgaccaacctacgagtgacaaatatc
aatggtcggcgactccgaatcgcctgggcaggtgttttgggggcgacagggtacagggtc
acgtggagacaaggcaacaatgctgagcagtcccatgatctgggaccagaggcctcaacc
tacacgttggaggggttacagccagacgaggctgtggtcctgggtttggcggctgtgatt
ggtcaacgcatcggggaagtggtcactctctcagccaggaccaatgggaacaccggctca
atctcaagcacggttagcggcctgcgaatcgttgatgtcacctttcagaggatacgcatc
acatggtcacctgtttccagggcaactggctacaagattacctggcgcagtgaagatgga
gtggagtcctcccgcacagtggccgctgatgtcacttccttcaccattgacagccttcag
gaagattcctcctaccgggtgtcagtctcctcactgattggctctcgagaaggacgcccc
gcctccctgaacaccagaacagcatcagaccagggtgttgtgggaacagtgacttcactc
caagtccaggagtcccgcggtgaggtcgtcagggtaacatgggtgggcgtgcagggagca
acagcctatcgtgtgtcttggaagcgaattgatggtggggaggagaggagccagctggtg
ggtggtgacctgacagcggtggatctggagcagctggacccaggggctcagtatgaggtg
caggtcatggccctggtccagaacagacagggaaccccggtctctgtcagagtcaccaca
ccaggggaacctgctgctgtagcccgggtggaaggggtcagggtgctggaggctacccca
ggggtgctgcgtctggtctggagagggatggccggggttacagggtaccgcatctactgg
agatcagccctgggtgaggctgaatcgagccgtctgataggtagagatgcaacctcgttt
gacctggatggtctgcggcctggggtgagctacactgtgaggctggctgccatcttcagg
gacagagagagtcaagctgtcactatcactgcctccacagctcccttaaagcctataagg
ggtctgcgtgctatggaggttacccagaattctgtgttgttggactgggttccattaccg
ggtgctacaggatacgtcctgcgctggagagaggaaagggacactggtccgggtcagtcc
atccctctgcctgggacatccagctcctacagggtgactgggctgcgtctgggactgagg
taccgcttcaccctgcagcctagcttccagagggaggttggccctgagacctcactggac
gagcgtactgtgtgtgtaggtggtcgtctggacgtggtgttcctggttccagcttccagg
gatcggaccagcctggttgagcccctactctctctcctgaccagcgctgccggctccctc
accagcatcggagcccgggactcacagatggggattgtagtatacagcgccaggcctaag
gtctggttcctgctcagtcgccacagcaacagtgagacgctgcttcaggagatcctgtcc
acgccttttgaagatggcccagggaatgctataggccaggcggtgacgttcactagacag
ttccttctcagcccgacagctggtcgtagagcaagaattcctggcgtagtggtgatcatt
gcagacaaaaaatcatctgacaacatcactgtcccagccaatgctgtcaaagcctcaggt
gtcacagtgctggcggtgggtataggtcgggcggactctgaggaactgcgccaggcggtg
acagatggcagcacccagaaccttctatatgctcgtgataccacccagcttggcacactg
cacgccgacctggctgacctgctgtgtggcgtcgccaggataccagagggagggggccca
gtggcagagccgtgcaccatacagtgtcctcggggtgatcgaggggagcgaggagaaaag
ggagagataggacgagacggtactgacggacgcaaaggagagcctggtcgtgatggtttg
cctggcagggacggccccagggggcctgaagggcgacagggcctgcctggagggagtgag
gccccctcagttggtgttagaggggagaagggggagaggggttttcctggtctggatggg
ggtccagggttgccagggcgaccagggaccccgggccctggaggagtaccgggttcacag
gggctatcaggtatcagaggagatcctggtgatcctggggttaaaggagcatcagggaca
aagggtgaccggggtgacaggggtgaaccagggtcggctgtttcaggaggaggtctgcct
ggcaggaaaggagaaccagggattccaggattaccaggtaccacagggcgtccaggaact
gaaggggccaagggctttgtgggacctgcagggatcccaggacaggacggtcgccccggg
ataccaggcgcccttggcctctccatcaagggagataagggcagcacgggagagagggga
cctccaggagtgggcagtggctcggctgtaaagggggagaagggatcaccgggttctgat
ggatacccaggagctcaaggtcccagaggacttacaggacaacagggagccaaaggagac
aagggagagagtgcagaggggttgccaggaccgtctgggaagacaggagagcctggtgat
cggggtctccgtgggcctgctggaagccttggagtcaagggggaccgtggccagccaggt
gagcctggatcacaaggtgacaggggggagagaggacttgctggcttgctaggggagagg
ggggaaagtggacagccaggctctacaggggctccaggcctgaggggtttgcctggcacc
agtggattaccaggggagaagggcagcgagggcgctaagggagaacctggccggagtggg
ccaggcttaggtgggaagaaaggtgaacagggtgagccgggtctgccaggtctggagggg
cccaggggccagaaaggcgagccagcccagaaaggtgaaaaaggtcccccaggtgctggc
actcctggccaggctggacctaaaggagagcagggggatcggggagtccctggcttagct
ggaagactggggaccaagggagacccaggtgacccaggagagagaggagagacaggacga
gctggacccgcaggaaagaatggcctcccagggaaagagggagccaaaggagacaaaggc
gacgaaggcactcccggggagtctggtctaccagggaaggcaggggagagaggagtacgg
ggtctgtcgggtcagcctgggcgagcaggggagaagggagacctgggagactctggagcg
cacggacgcaacggcagcccaggatctattggaccaagaggagagaaaggagttgaggga
gctcaaggcctcccaggacctccagggaacatgcgtgatatagagcaaaagcttaaagga
gaaagaggagaaaagggggatgctggcgatccgggagagcatgggggcaaaggtcagaag
ggcgagaccgggccctcaggggccactgggctgcgtggtcttgagggacaacgtggacct
tcaggggcaagaggtgacacaggagagagaggaggcccaggagagaagggtgagagaggt
gcgtctggactggatggacgcaacggtttggatggcaaaccaggtgcaccaggaccggcc
ggcctgaggggagacgcagggaaactaggggatccaggaagagatgggctgccaggactg
agaggtgcacagggcctctcaggccctatcgggcctgcaggaaatccaggcacacctggc
aaagcaggagaagatggaaaaccagggactgctgggaaaatgggcgaggatggcgaaccg
ggggaagatggcaggaagggtgacaaaggagaggctggggctgctggaagagatggccgt
gacgggctgaagggagaccggggccttgcagggcctacagggccaactggtctatctggg
accccaggggttcctggcaccatcggacctccctctcaggtggtctatgtgaagggagcg
ccagcaccatctattcctggccctcaggggcatacaggaaccccaggtgagcctggaatc
ccaggggctgtaggagccagaggggagaaaggagcagtgggtggtaaaggtgaaagtggt
gaccctggagaggacgggaaaccgggcaggtctggaacagcagtggatgtgcagaaggcc
ctctctaaccttgggattgaggtgcaggacttgaagttggttatggaaaggaggaatgtt
ctggtcaagcctgtggtggagcaagctgagaagggccagagaggagacaagggagaggct
ggacagagaggaccagcagggatagacggtgctcgcgggctggctggagagagaggtgtg
aagggagagcagggggaacaggggcctgtaggggccacaggacccatagggagggccatc
ggagagaagggcccggtggggcccccgggacaggctggagagccaggaaaacctggaata
cctggagtaccagggagagccggagaactgggagaggctggacgacctggagataagggg
gatagaggagagaaaggtgacaaaggagaggatgggaaaaatgggctagctggattagtg
ggcccacctggaccaaagggtgcttctgcagaagagggtcaggctggactcgccggagca
agggggccccctggggtcacaggaccgaaaggagagcctggtgctttaggaccacaggga
tccaaaggagacgggggtattgcaggtccccatggagataaaggtgaccgaggtccatct
ggagagcagggacgcaatggctttcaggggacagcaggagaacctggaaaaccgggacag
gatgggaagccgggcctgcctgggttccctggagtgctgggcagaccggggaaccctgga
gaacctggaattagaggatcaactggtccgatcggtaccaacgggcctccaggtccacca
ggggtcaagggtaatcaaggagtgcctggggttggcgttcagggactgtctggtccccaa
ggcagcatgggattgccaggacctgcagggcctcccggagctgtgggtccatcaggacct
ccaggtctgccggggcagacgggcgaggggggcaagccaggggtcccaggaagagatgga
atacctggaaaagagggaacaccagggttgccaggcaaacagggtatcactggaccaatg
ggctccacagggttgaaaggggagcagggggacagtggccccccaggaaaggctgtagca
ggaccccctggtgtgaaaggagcacagggacctgctggtgtgaccttacctgggacaatg
ggagagagagggctgccagggctacggggtgagagaggggacaagggtcctgcaggcatc
aaaggggacaggggccctgctggtgaaaatggcgagcctggagaagatgggggcagagga
catgcagggcctaaaggagacaagggagagagaggcatcggactggcagggcctcctggt
cagctgggacctcaagggttaaagggagacacaggactcccgggcccagcaggtcctcca
ggagcccgtggcatagcagggacccctggtctggccggcctgagaggagagaacggaacc
ccaggacccccaggacctttaggacccaggggtctccaaggctttcctggtcaggtaggg
acccctggaggtcctgggccccctggacccaccggcctagttggtacaccgggaactgct
ggaggcaaaggggacaagggagcgattggagcaggagtacctggattgagaggcgagaga
ggagacccaggaccccggggggaggagggtcgagctggtttggacggggacagaggacta
gtgggctctccgggtggcaaaggaggcagtggagagaagggtgaattggggcctcaaggt
gacaaaggagaaaagggcgatactctcctggtgggaggacctacgggagagaagggtaac
aaaggagagacgggtgaccgagggccaaaagggggtcagggggagaaaggcttgaaaggc
agtgacggcccagctggggagcagggtctgagaggtgagccaggagacaggggctctaca
gggttccagggggccagaggtccaggaggacagaagggagaggcgggcctgcctggtgta
cctggagaatctggtacaccaggaaaagatggaatgccaggctttagaggagagaaggga
gacatgggaataactggaatgcgtggaattaagggcgaccgaggatcaaagggggcgtgt
ggatcggacggaccaaaaggagaaaagggagattcagggatccatgggcggtcagggttg
cctggaaggaaaggtgagcagggagaattgggttctccaggggccactggaaccgcaggc
aaggagggattgatcggacccaagggtgaccgaggcttggatggagtcttggggcccaaa
ggagctcagggagagaagggtgaaaggggcccctcaggtatccccggccccccaggcccc
agaggagtagacgggtcctctggactgacagggtctcagggaccaactggagctaagggc
cccgaaggcctccaaggacagaagggggagcgggggcctcttggtcctgccatgataggt
ccacgcggtatcccaggtaaaccaggagataggggcaaggagggggagttgggtccagat
ggagccaagggagacagaggagaaccaggcttgacggaggatgagattcggacatacgtc
cgcacagaaatgagccaacactgtgcttgtggaggtgagtgggtatcggtctga
DBGET
integrated database retrieval system
