Oncorhynchus masou masou (cherry salmon): 135542772
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Entry
135542772 CDS
T10723
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
Exosome [BR:
omm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135542772
Proteoglycans [BR:
omm00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
135542772
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135542772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135542772
NCBI-ProteinID:
XP_064826030
LinkDB
All DBs
Position
6:complement(80649741..80714861)
Genome browser
AA seq
1849 aa
AA seq
DB search
MSKMTLWLGLLLALSAGRLDAWFWNKDPDPTTQAPTKAQPLGKAGGQLKRGEENLSGVGA
EIINVANGIRKFVQTWDATPATWTDRGVASPTTQTANKEESVSGEGSGAKEESGSGYKEG
SGSGEGSGAKEESGSGEGSGFKEGSGSGYKEGSGSGEGSGAKEESGSGEGSGFKEGSGSG
YKEGSGSGEGSGSKEGSGSEMGSGSGSGSVSGVGSGFGSGVESGVGSGTGSGSGSRLGER
ESLVLPTNLTGVVEDDLTGVEGVKQGEPKTNFSDISSLDHNGTCHLVPSDWPICISRGSK
HFSLPNFLNHTSVEEVGVALREWAWLAKAGCHHGAEWFLCLLLVPRCLPGQVLNKVPLLP
CCSFCQVLQDSCWPALDDGRLPVECNLLPDRDQEAGLRCPPCVSVSHRKAESGVTLLQLI
GDLPPESQAGPGGKPAYYFGGQDGLTAAGQPALAHLPNPFYRDFSLVFQILPSSPGVLFS
ITDASQKFMYVGVKLSAPDPDGRNQNILFYYTEPDSEASYLAASFTVPSLDLVSWTKFSL
SVFNDQVTFFMGCDASGKTVKLERSPDDMELDSGAGIFVGQAGGADPDRFEGAIAELNVV
GNPRAAELLCEDDDDSDAASGDFGSGDGDRRETGKTTTPPSLRPVPEPPLTSSVSDRLSE
TGDRNHQTSVESRPGSGGQPGPTGSNGVKGERGEKGSPGDRGPAGPKGESGSFSSSASSS
GGGERGEKGDKGLKGSSGFGYPGSKGDRGVPGPPGPPGPGGPAAQVVRLGDGSVVQPVVG
PMGPMGPPGAKGPAGPQGPEGEAGDPGEDGKLGPAGDRGFPGTQGDSGVKGQKGDRGDGH
PGPRGPPGPPGPPGPGKADRATFVDVEGSGGFPDLEKIQTLRGLPGPPGPPGPPGPSAGG
VSSHGSGSFGPPGPPGQDGARGLPGPAGPPGRPGTPGSSSGEKGEAGDLGLPGPSGERGS
QGDPGVPGQAGQGGLAGLPGPMGPIGPPGPPGPSYPVRYGDGDGSGVTGVNGVAGVIGIP
GPQGPPGIAGLPGRSGLPGLSGEKGSEGARGRDGTPGMDGFPGQLGDKGERGDRGERGEP
GREGGPPGPPGAPGPPGQIYQTSGSFDGVLGNQGQGGPGLPGRAGFPGPMGPKGDTGEPG
QPGYAAKGEKGEPGIVMGPDGRPLYLGGLGSQPGEKGLPGPEGPPGPYGPAGLKGDIGMP
GRPGRPGLNGVKGERGDSAGGTGGYGGPPGPPGPPGPPGPAVPLDRFNRDDVSRLYPDSK
GDKGDRGVPGIPGVPGLTSNFDIYTFKREMKGERGDSGMKGEKGEPAGGYYGGGYGGQGG
QPGPPGLPGPKGESIIGPSGPQGPPGNPGRGYEGRQGNPGPPGPPGPSGSSSSPGAYRPT
QTISIPGPPGPPGPPGTDGHSSGVMVLRSYDTMTATARRQAEGTLVYLVDQTDFYIRVRN
GFRQIQLGPYIALPPDQGNEVAAVDPPPVVYYQPDHPSNTATEQPPRQLDTHQPQPEGQH
PVHPDPHYSTHPDPRYPAQPDPRYPAQTDPRYPAQTDPRYPAQTDPRYPAQPDPRYPAQT
DPRYPAQTDPRYPAQPDPRYPSHSDPRYPSNSDPRYPSHPDPRYPSHSDPRYPSHTDPRY
PSYTDHQHNPDPIQPQPAPVPQNPVYSDTRYPVTPQRRPRPPETPSHQHTSGPSIHLVAL
NAPQGGNMRGIRGADFLCFNQARAIGLKGTFRAFLSSKLQDLYSIVRKSDRDRMPIVNLK
DEVLFDSWEAIFSDSEGRVKDNVPIYSFDGKDIFTDGTWPDKMIWHGSTSRGHGQVDNYC
ETWRIGERALTGMASSLQEGQLLQQRTSSCHSSYAVLCIENSYIGQFKR
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagatgacgttgtggttgggccttctcctggctctcagcgcaggtcgtctggat
gcttggttctggaacaaggaccctgatcctactacccaagccccaacgaaggctcagcca
ctgggcaaggcaggaggacagctcaagagaggtgaggagaacctgtcaggggttggggca
gaaatcatcaacgtggctaatgggatccgtaagtttgtgcagacgtgggacgcgacccca
gccacttggactgacagaggagtggcgagccctaccacacagacggctaataaggaggag
tctgtgtctggggaagggtctggggctaaggaagaatctgggtctgggtataaggaaggt
tctgggtctggagaagggtctggggctaaggaagaatctgggtctggggaaggatctggg
tttaaggaaggatctgggtctgggtataaggaaggatctgggtctggagaagggtctggg
gctaaggaagaatctgggtctggggaaggatctgggtttaaggaaggatctgggtctggg
tataaggaaggatctgggtctggagaagggtctgggtctaaggaaggatctgggtctgag
atgggttcaggatcagggtctggttcagtgtctggtgtagggtctgggtttggatcaggg
gttgagtctggtgtaggttcagggaccggctcgggttcagggtcacggcttggagaaagg
gaaagcttggttctccccactaacctaacaggggtggtggaggatgacctcacaggggtt
gagggggtgaaacagggcgaaccaaagaccaacttctctgacatctcttctcttgaccac
aatggaacctgccaccttgtgccctctgattggccaatctgcatatcaagggggtcaaag
catttctcgctgcccaacttcctgaaccacacctctgtggaggaggttggcgtggccctg
agagagtgggcgtggctggccaaggcggggtgccaccatggagccgaatggttcctctgc
ctcctcctcgtgcccaggtgcctgcctggccaagtgctcaacaaggttcccctgctgccc
tgctgcagcttctgccaagtcctgcaagacagctgctggccagccctggatgacgggcga
cttcctgtagagtgtaatttgctgcccgacagggatcaggaggcggggttgcggtgtccg
ccatgcgtgtcagttagtcatcggaaagcagagagtggtgtgactctactgcagctgatc
ggagacctgcctcctgaatcccaggccggtccgggggggaaacccgcctactacttcgga
gggcaggacgggctgactgctgcgggacagccggccctggcccacctccccaaccccttc
tacagagacttctccctggtcttccaaatcctcccctccagccccggggtcctcttctcc
atcacagacgcctcccagaagttcatgtacgtgggggtgaagctgagcgccccggatcct
gacggcaggaatcagaacattctgttctactacacagagcccgactctgaggcctcgtac
ctggccgctagtttcaccgtgccctccctggaccttgtctcctggaccaagttctctctg
tccgtgttcaacgaccaggtaaccttcttcatggggtgcgacgcctctgggaagacggtg
aagttggagcgctcgccggatgacatggagctggacagcggggcgggcatcttcgtgggt
caggcgggaggcgcggaccctgacaggttcgagggggcgatcgctgagctgaacgtggtg
ggtaaccctcgagcagctgagttactctgtgaagacgatgatgactcagacgctgcctca
ggggactttggcagtggggatggggacagaagagagaccggcaaaactaccacacctcca
tctctccgaccagtgccagagccccctctgacatcatcagtgagcgacaggctctcagag
acaggtgacaggaatcatcagacctcagtagagtccagaccaggatcaggaggtcaacca
ggccctactggttctaacggagtgaagggggagagaggggagaagggcagtccgggggac
agaggtcccgccgggccaaagggggaatcggggtctttctccagctctgcttcttcatca
ggcggaggagaacgtggagaaaagggagacaaaggcttgaagggcagttctgggtttggt
tacccaggctccaagggggaccgtggtgtacctggtccccctggccctcctggccccggg
gggccagctgcccaggttgtgaggctaggggacggctctgtggtgcagccagtggtgggg
ccaatgggaccgatggggcccccaggagccaaaggaccagcaggaccccagggaccagag
ggagaggcaggggatccaggagaggatggcaaattaggacctgccggagacagagggttc
ccaggaacacaaggagactcaggggtcaaaggacaaaagggggatcgtggtgatggtcac
ccaggacccaggggtcctccagggccacctggacccccaggcccagggaaagctgaccgc
gctacatttgtggatgtggaaggctcaggaggattcccagatttggagaaaatacagact
ctccgtggtctaccaggcccccccggccctccaggcccccccggcccctcagccggtggt
gtcagctcccatgggtcaggctctttcgggccccctggacctcccggacaggacggggcc
cgtggcctcccagggcccgctggtccacctggcagacctggaaccccaggatccagtagc
ggagagaagggagaagctggtgatctaggtcttccagggcccagtggagagaggggttct
cagggtgaccctggagtgcctggtcaggcagggcaggggggcttggctgggcttcctggg
cccatgggaccgattgggcctccaggaccacccggaccttcctaccccgtgcgttatggt
gacggggatggttccggagtgacaggggtcaatggtgttgctggagtgatagggattcca
ggaccacagggtccgcccggaatcgctggccttccgggaagatctggtttgcctgggctt
tcgggagagaaggggagcgagggagcaagaggacgggatggaacaccagggatggacgga
ttcccaggacaattgggagacaaaggggagaggggagacagaggagaaaggggtgagcca
ggacgtgaaggggggccccctggacctccaggagcccctggcccaccgggacagatctac
cagacgtcaggcagctttgatggagttcttgggaatcaaggacagggaggaccaggtctt
cccggccgggcaggattcccagggcctatgggaccaaagggagatacaggagagcctgga
cagccaggatacgcagctaagggggagaaaggagaacctggtattgtcatggggcctgat
ggaagacccctgtacctgggagggctggggtctcaaccgggagagaagggactcccggga
cctgagggacctcctggtccctatggtccagctggtctaaagggagatataggcatgcca
ggtagaccgggccgtcctgggttgaatggtgtcaaaggagagaggggggattcagcgggg
gggactggaggatatggaggtcctccaggaccacctggcccacccggaccccccgggcca
gcagtacctctggacaggttcaatagggatgatgtctcacggttatatcctgactccaaa
ggagacaaaggtgatcgtggagtaccaggaatacccggggtaccaggtctcacgtccaac
tttgacatctacaccttcaagagggagatgaagggagagagaggagactcagggatgaag
ggggagaagggcgagccagccggaggatattatggtggcggttacggtggacagggtggt
caacctggacctccaggacttccagggccaaagggagagtccatcatcggtccttcaggg
ccccagggccctccaggtaacccaggaagagggtacgaaggcaggcaagggaacccaggc
ccaccggggccccccggaccttcaggatcatcctcctcacctggagcctacaggccaaca
cagaccatcagcatccctggacctccgggccctcctggcccacctggaactgacggacac
tcctctggggtgatggtcctgaggtcatatgacacgatgacagccacggccagacgacag
gcagaggggacgctggtgtatctggtcgaccaaacagacttttacatcagagtacgaaat
ggcttccggcaaatccagcttggaccatacatagctttaccccctgaccagggtaatgag
gtagcagctgtcgaccctcctccagtggtctactaccagccagaccatccctctaacacg
gccacagagcaaccccccagacagctagacacccaccagccacagcctgagggacaacac
cctgttcaccctgacccacattactcgactcaccccgatccacgctacccagcccagcct
gatccacgctacccagcccagacggatccacgctacccagcccagacggatccacgctac
ccagcccagacggatccacgctacccagcccagccggatccacgctacccagcccagacg
gatccacgctacccagcccagacggatccacgctacccagcccagccggatccacgctac
ccctcacattcagaccctagatacccctcaaattcagaccctagatacccctcacacccc
gacccacgctacccctcacattcagaccctagatacccctcacacactgatccacggtac
cccagttatacagaccaccagcacaaccctgaccctatccagccccagccagcccctgtc
ccacagaacccggtttactcagacacccgctaccctgtaaccccacaacgcagacccaga
cctcctgagacccccagccaccaacacacgtcaggcccaagcattcacctggtcgccctg
aacgccccccaggggggtaacatgcggggtatcagaggggcagacttcctgtgtttcaac
caggctcgggccatcgggctgaagggaaccttccgggctttcctctcctccaagctccag
gacctttacagcatcgtccgcaagtcagacagagaccgcatgcccatcgtcaacctaaag
gatgaggtcctgtttgacagttgggaggccatcttcagtgactcagagggcagagtgaag
gacaatgtacccatctactcctttgatggcaaagacattttcacagacggcacatggcca
gacaagatgatatggcacggttcgaccagcagggggcacggccaggtggataactactgt
gagacgtggcgtataggggagcgtgcgctgacgggcatggcctcctctctacaagagggc
cagctcctccaacagagaaccagcagctgtcacagctcctacgccgtgctctgcatcgag
aacagctacatcggacagttcaagagatag
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integrated database retrieval system
