Oncorhynchus masou masou (cherry salmon): 135542903
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Entry
135542903 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like 2
KO
K13126
polyadenylate-binding protein
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
omm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135542903
09123 Folding, sorting and degradation
03018 RNA degradation
135542903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135542903
03041 Spliceosome [BR:
omm03041
]
135542903
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135542903
mRNA cycle factors
Stress granule specific factors
135542903
Spliceosome [BR:
omm03041
]
Complex C
Other components
Complex C specific factors
135542903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_Nup35
RRM_5
RRM_3
Motif
Other DBs
NCBI-GeneID:
135542903
NCBI-ProteinID:
XP_064826118
LinkDB
All DBs
Position
7:complement(24757817..24759067)
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AA seq
381 aa
AA seq
DB search
MNSLYVGDLHQNVTEADLNEMFSEAVPIFSVCVCRDRDTHRSLGYAYVNFYQQDNADRAL
LMFSNDMLEGRYLRIMSSDPDCTLRKSGVGNIFIKNLDKQSITNKNLYETFSAFGDIYSS
KVVCDENGHSKGYGYIQYKTQEAADRAIEKLNGMLMDNEKVFIEHFKSRKEREEVLGAKA
REFNNVFVKNLGRDTNDEKLIELFRKYVKNLDDAFDDHRLRKEFSAFGTIISAKVMTESG
RSKGFGFVSLSSPEEATKAVTEMNGRIVGTKPLYVALTQQGTAATIPDRPVQAEVSIMAV
PNPIINSYQPPIPTFYSNVHIPQAQSHAAAYYFSNQLVQLSSSPGMMTVERIATQALGQR
PHHPASADAATAMSKPQYKYM
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaattctttgtatgttggtgacctccaccaaaatgtcacagaggcagacctaaacgag
atgtttagtgaggctgtaccaatcttttctgtttgtgtatgtagggatcgggatacacat
cgttccctcgggtacgcctacgttaacttttatcagcaagacaatgctgatcgtgccctg
ctcatgttcagcaatgatatgctcgaaggaagatatctgcgcatcatgagttctgatcct
gactgtaccctgaggaagagtggcgtgggaaacatcttcatcaagaacctggacaagcag
tctataacaaacaaaaacctgtacgagaccttctcagcatttggagacatctactctagc
aaggtagtttgtgatgagaatggccattccaaaggttatggttatattcagtacaagacc
caggaggctgctgatagagccatcgagaaattaaatggcatgttaatggataacgaaaaa
gtgtttatcgagcactttaagtcacgcaaagagcgagaggaggtgcttggagccaaggcc
agagagttcaacaacgtgtttgtcaagaatcttggcagagacacgaacgatgagaaactg
attgagctttttagaaaatatgtaaagaacctggatgatgcctttgatgatcaccgttta
aggaaggagttttctgcattcggaacaatcatcagcgccaaggtgatgacggagagcggg
cgcagcaaaggctttggctttgtttccctctcctcccccgaggaggccaccaaggctgtg
acggagatgaatggccgtattgtgggaaccaagccgctttacgtggccctgactcagcaa
ggaacagcggcaacaatacctgacagaccggtacaagcagaggtcagtatcatggcagtg
cccaaccccatcatcaactcctaccagcctcctattcccaccttttactccaatgtgcac
attccacaggcccagtcccatgcagctgcctactacttcagcaaccaactggttcagctg
agttccagccctggcatgatgaccgttgagcggatagcaactcaggccttgggccagcgc
ccacatcatcctgccagtgcagatgcagccactgccatgagcaaacctcagtacaagtac
atgtga
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