Oncorhynchus masou masou (cherry salmon): 135544020
Help
Entry
135544020 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-16-like
KO
K16507
protocadherin-16/23
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omm04515
]
135544020
Cell adhesion molecules [BR:
omm04515
]
Cadherins
Cadherin related
135544020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Fibulin_C
Cadherin_pro
TMEM154
CADH_Y-type_LIR
RibLong
LapA_dom
Motif
Other DBs
NCBI-GeneID:
135544020
NCBI-ProteinID:
XP_064827429
LinkDB
All DBs
Position
8:5176808..5455825
Genome browser
AA seq
3311 aa
AA seq
DB search
MTITCEGGPRASSLCVCSGLWRPRSLLLLYTVLELVVVRSTPVLGALELQLDEEQPAGTI
VGDISAGLPPGITASLYFISDHEGTGVGSDLNIDETSGIITTARRLDREQRDHYSFIAVT
MTGVTVEVSVTVNDINDHAPAFLKPKALLKIPEQTAVGTRVSLEPASDADRDLLTTQGYV
IKEGNVGQAFRLETKRAANKVLYLDLVVNGVLDREKRSSYSLVLEAFDXGSPRRTGLMTL
EVFVTDINDHAPVFNQSRYHAIISESLPQGSNILQVFASDADEGDNGLVLYEINRRQSDP
DRYFVMDTRSGVITLNRPLDYELKRVHELVVQARDNASHPEVTNAFVTIHVRDYNDNQPT
MTIIFLSEDGSPRISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSII
YLICVDQVLDREERDTYELRVMATDAGTPPLRAESSFTIQVTDVNDNPPLFDQQAYKQTI
PEVVYPGSFVLQVTARDKDQGPNGDIRYSLLKDKKSHSDWFSIDPVTGIITTAMALDYES
EPAPSVTVVATDNGRPPMSSTARVAVVLQDVNDNEPVFSSNFYNVTIKENTAVGTCFLEV
TATDADRGSFGAISYSLGSSSSSMVPAQFTVNKETGQLCSSTTLDREQGSGNYDLTVTAT
DGGGQSAVTRVRVYLEDVNDNRPSFYPVLYTVSLSTQSAPGTSVTKVTANDPDAGDNGRV
TYRTVTGGGSTFFTLNKDTGVISLARSLHGKANTLVSMVISAQDGGGLTAPLNARVNVSV
VGGSVALPLFEQAQYYFTVSEEVLRGTEVGKVHAAIKTGPSQNIFYSISSGDPDGYFTMV
STSGALRSSVPLDHEACPSLDLEVLARYGSPPAYGTTRVRITISDVNDNAPSFLPSSSES
LLLPEVTKMGTVVYRVQATDRDSGPNGQLSFDLVSIGTEGSSGQRMFGVDRGSGELKLIG
GLNYESVPRYDLQVVAKDGGAPQLSSTFTLVVHVQAQDAQGPAFDTLTYRVELQENTPLN
TRILQVRALNREAAVNGGGSSSSSVSYRLHPDGDAAGFGVAPDSGWLFVRSSLDREAKDM
YLLTVVATSGPGGQGAAGAGRTGSATVRVSVTDENDNSPRLSQVFLALRENLPAGTGFGR
VSATDRDAGLNARLTFRLLHTDRHFQINSHTGEISTRLSLDREQQSSYQLVVVVQDGGTP
PRSATGTAHITLLDENDNAPVFNHAHPDRELFIQVMEESQPGSVLGTITAKDPDLGENGT
LQYSLSGSRVECFSLNPTTGELRCSSSLRHGERAEYNLTVSASDHGTPPHTSTCPLRIQV
LSSSKSSAKNTLSMTLNSVEGVAPGSVIGSVRSHDQRDTLSLDGQVTYVVVGGTDRKGTF
MVDRVTGDVYLVRVLDYEEGDRYTLHVEVSDFTLAYPSSHRVQLDINVQDSNDHAPQFTE
DPVTIVIPENTQPGVSIYTFQASDKDGSGPNSELRYSIQHLWPDSLHLLTLDPSTGVLTL
GRKLDHETTSSLYLVVRATDQAEDVSARRWGSVTARVFVTDENDNAPVFSSSSAVSVMED
QPVGFVVVYVMARDEDEGENGRVSYSIQLGNSAGRFSLNPNTGSLSILKALDREDQEVFN
LTVIAEDHGMPQLSTSQVLSVHVIDVNDEPPLFQGEELEAEVRENQEAGTTVITVTATDR
DQGSNGQVTYGGVTEEGFSINPVTGVISTTKTLDREIQDHYTLTVYARDGGLPPNFAKVV
VRVLVQDENDNVPVFARPWYGLEVPESQSAVELCIVRAADADTGLAGDIEYRITAGDPDG
IFQLHVSSGALSTSRPLDRELRAGYNLEVVALDHGSPALSSTATVEVKVLDVNDNSPAFS
SSSYTIDVPEDAAQGTTVLEVTATDADDGENGKVLYFLSQEARGAFTVDENTGCITTASP
VDREKRASYSFRVFAVDLSPAEPRNTSAQVTVTILDINDNAPFFIQDPLVVEVSASQSHR
VLATMRAEDKDFGANGSVFYRFAGPVRGFSINSLTGEIQGTEGIDRLSQAQRTLMVEAMD
QGTPAQSSLGVVVVYVKEQAYTGIRFSRNARDVSIQENAAKGTAIAQDQAQYPDGTRRGI
SYSLFSGNRLQAFSIGTSTGEIRVQRSLGLDFEDTPRLRLVVKAATASSSSFMAVNLILQ
DINDNLPRFQLQNYVAYMREAQGYDMPIIQVVAEDVDQGQNGQVTYSIQSSGGMSGLFKI
DPVTGSITTAAIMDREIWTQTRLVVTATDRGSPRLAGSATLTVIIVDLNDNSPTIPLPRE
VRIPENTLIGTEITLVTGNDVDSSPALSYSLQLDGSSQGKFGIHRYSGGVSLTAPLDYED
RTWYTLTVRATDSQHQTEANITILVEDVNDNAPAFTHDLYQVTLPEHSPPGSPVVTVTAT
DRDSGENGKVTYRVMSSTRGGFYVDPGNGTLFIRERSEFDPEKLSVSVVIEACDGGSPPL
SSFTTVQVQLSDVNDNAPVFHQSEYRATVLEDSIPGATILTLEAMDADFSRDNCGFDFAI
ANGNTGNVFQIESSVRFLEGRGFQTVGTLLLAEVLDFEAVPLYNLTVVVSDRGVPQRSSS
VAAVITVGDVNDNPPAFGRAEYAVSLSEGAGAGTEIIRLTATDPDSAPNAEVQYSISSGD
EMDLFTIDQWTGALRLQRQLDREHQSSHVVIVQASDGHGHVALTPISVEVKDVNDNRPFF
PIETLTASIRENLPVNSAVTILHAIDHDTGMYGQLRYYMVEQGQGSGVTGREAFTVDQSS
GEVRAKMTFDFEKVNSFNFVALAMDAGNHSATVTVQVYVTGEDEYDPLFVSPEFSFEVPE
GAKRGQSIGQVQANDEDGGVDGIVLFSLPSSSLYFDVNKTTGVVFLKMDGSSSRSSSSGL
GGRSKRETRTMTLDVHAHSPLDTSRVTTAQLTIDVTNTSFGLGADLNVLLIIIIAVSLGV
VVLLVVMAVVIFLLKSKRRRKNKGRDNSAVASGTTLQKLDDSKSGGSERIYHQTLPGYAG
DQGGAGAVPYPRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASISSSMQEHISARGP
DSGIQQDADQLSDISCEPAALEGSTWFKGKKLGGSLSGTMLSGQLPVYRDELGGGYLGVG
RGLNISHPKDYAFPEDGKPSVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTE
IARLKDETAPQNQTNPRQPFQPKAKTDPKPRIDPPPLITAVAHPGAKSVPPKVPVIGRTF
PHLATLRRSPISHEGSISSAAMSPSFSPSLSPLAARXPAVSPFGVTQGPSTSMISTRDPM
LDHSPDHEMRI
NT seq
9936 nt
NT seq
+upstream
nt +downstream
nt
atgacaataacgtgtgaaggtgggcccagggccagcagtctgtgtgtgtgttcaggccta
tggaggccacggtctctcctcctgctctacacggtcctggagctggttgtggtccgctcc
accccggtcctaggagctctggagctccagctggatgaggagcagccggcagggaccatc
gtaggggacatcagtgctgggctcccccccggcatcaccgcctcgctgtacttcatctcc
gaccacgaagggacaggtgtgggcagcgacctcaacatcgacgagacctccgggatcatc
accacggcacgccgcctcgaccgcgagcagagggaccactacagcttcatcgccgtcacc
atgaccggggtcacagtcgaggtgtccgtcacggtcaacgacatcaacgaccacgcgccg
gcgttcctcaagccaaaggcattgctgaagatcccggagcagacggcggtgggaacacgc
gtttccctggagccggcgtcagacgcggaccgcgatctactgaccacccaaggatatgtg
attaaggaaggcaatgtggggcaagccttcaggctggagaccaaaagagctgctaacaag
gtgttgtacctggacctggtggtgaatggtgttctggacagggagaagaggtcctcgtac
agcctggttctggaggccttcgacnnggggagtcccagacgcaccggcctgatgaccctg
gaggtgtttgtcaccgacatcaatgaccacgcccccgtcttcaaccagagcagataccac
gctatcatctcagagagtttaccacagggaagcaacatactgcaggtgtttgcgtccgac
gctgacgagggagacaacggcctggtcctgtacgagatcaaccgtcgccagagcgaccct
gaccgctacttcgtcatggatacgaggtcgggggtcatcactctgaaccgtccgctggac
tacgagctgaagagagtccacgagctggtggtacaggccagagacaacgccagccaccct
gaggtgaccaatgccttcgtcaccatccacgtccgagactacaacgacaaccaacccacc
atgaccattatcttcctcagcgaagacggctcgccgcgcatctcagagggcgcccagccc
ggccagtacgtggcacgcatctcggtcaccgacccagactatggagaatacgccaatgtt
aacgtttcgctagagggaggggacgggaagttcgccctgaccaccaaggacagtattatc
tatctgatctgtgtggaccaggtgttggaccgcgaggagagggacacgtacgagctaaga
gtcatggcaacagacgcaggcacccctcctctcagggctgagtcgtcctttactatccag
gtcactgacgtgaatgataatccaccactcttcgaccagcaggcttacaaacagaccatc
ccagaggtcgtctacccaggatcctttgtgctccaggtgacggcccgggacaaggaccag
gggcccaatggggacatccgatacagcctcctcaaagacaaaaagagccactccgattgg
ttctccatcgacccggtgacggggatcatcaccacggcgatggcactggattatgagtcg
gagccagcgcccagcgtgacggtggttgccacggacaacgggcggcctccaatgtcgtcg
acggcgagggttgccgtggtgctgcaggatgtaaacgataacgagccggtgttctctagt
aacttctacaacgtcacaatcaaggagaatacggcagtcgggacctgcttcttagaggtg
acagcaacagatgctgaccgtggttcgttcggagcgatatcgtactccctagggtctagt
tctagcagcatggtaccggcccagtttactgtcaacaaggagactggccagctgtgttcc
agcaccacactggatcgagagcaggggtcaggcaactacgacctcaccgtgaccgctact
gatgggggtggtcagagtgcggtgacccgtgtgcgtgtgtatctggaagacgttaatgac
aaccgtccatccttctatccggtgctctacaccgtgagcctcagcacccagagcgccccc
ggaacctccgtcaccaaggtgacggccaacgaccccgacgctggtgacaacggcagggtg
acctatcgcacggtgacgggaggaggctccaccttcttcaccctcaacaaggacacaggt
gtgatctctctcgcgcggtcgcttcacggtaaggccaacaccctggtctccatggtgatc
tcggcgcaggatggcggtggtctgacggcgccgttgaacgcccgtgtcaacgtgagcgtg
gtcgggggctctgtggcgctccctctgtttgaacaggctcagtactacttcactgtgtct
gaggaggtcctcaggggcaccgaggtgggcaaggtccacgctgccatcaagaccggtcct
tctcagaacatcttctattccatctcatccggtgacccagatggttatttcaccatggtc
tctacctccggggcgctccgttcctctgtccctctggaccacgaggcctgtcccagtctc
gacctggaagtcctggctcgctacggctctccgcccgcctacggaaccacacgtgtacgc
atcaccatctcagacgtcaatgacaacgctccctccttccttccctcctcctccgaatcc
ctccttctcccggaggtgactaaaatgggaacggtggtgtaccgggttcaggccactgac
cgggactctggtccaaacggtcagttgagttttgacctggtctcgatcggcacggagggc
agtagcggtcaaaggatgtttggcgtggaccggggaagcggggagctgaagctgattggt
ggactgaactacgaaagtgttccgcgctacgacctacaggtggtagctaaagatggtgga
gccccccagctcagctctaccttcacgttagttgtgcatgtccaggctcaggatgcgcag
ggccccgctttcgacacgctaacgtaccgcgtggagctacaggagaacacgcctctaaac
acacgcatcctacaggtccgcgcccttaacagagaggctgcggtgaacggcggaggctcc
tcctcttcctcggtgtcgtacagactgcatccggacggtgacgcggcagggttcggggtc
gccccagatagtgggtggttgttcgttcgtagctctctggaccgggaggctaaggacatg
tatctactgacggtggtggcaacctctggaccgggagggcagggcgcggccggggcgggc
aggactggcagtgccacggtgagggtctctgtgacagatgagaacgacaacagtccccga
ctgagtcaggtgtttctggcgttgagagagaaccttccggcgggcacggggttcggccgc
gtgtcggctaccgacagagacgcaggactgaacgccagactgaccttcagactcctgcac
actgacagacacttccagatcaactcgcacacgggtgagatcagtaccaggttatctctc
gacagagagcagcagtctagctaccagctggtggttgtggtacaagacggaggcacgccc
cctcgcagcgctacgggtactgcccacatcactctattggatgagaacgacaacgcccct
gtctttaaccacgcccaccccgacagggaactgttcatacaggtgatggaggaatcccag
cctggctcagtcttggggacaataacagctaaagatcctgatttgggagagaacggaaca
ctccaatactcactgtcaggttccagagtggagtgtttctcattgaaccccaccacagga
gaactacgatgctcgtcctctctgagacacggtgagagggctgagtacaacctgacagtg
tccgcttctgaccacggcacacctccacacacctccacctgtcccctacgcattcaggtc
ctgagttccagtaagtcttctgccaagaacactctgtccatgactctcaactcagtggag
ggagtcgccccaggctctgtcattggctctgtccggtcacacgaccagcgtgacacgctg
tcgttggacggccaggtgacgtacgtggtggtgggcgggacggaccggaaggggacgttc
atggttgaccgggttacgggagacgtgtacctggtcagagtgctggactatgaggaaggg
gacaggtacactctgcatgtggaggtatccgatttcacgctggcgtaccccagcagtcac
agagtacagctggacattaacgtccaagacagtaatgaccacgccccccagttcacagag
gaccccgttaccatagtgataccagagaacacccagccgggagtctccatctacaccttc
caggcttctgataaggacggcagtggtcccaacagcgagctgcgttactcaatccagcac
ctctggcctgactcccttcacctcctgacccttgacccttccactggggtcctgaccttg
ggtcggaagttagatcacgagaccacgtcctccctctacctggttgtcagggcgaccgac
caggcggaggacgtgtccgcgcggcgctgggggtcagtgacggcccgggtgtttgtgacg
gacgagaatgacaacgctcccgtgttcagctcgtcctccgccgtcagtgttatggaggac
cagccggtcgggttcgtggttgtgtacgtgatggctcgtgacgaggatgagggagagaac
ggacgagtgtcctacagcatccaattagggaacagtgctggacgcttcagcctcaacccc
aacaccggctctctgtccattctgaaagctctagatcgtgaggaccaggaagtgtttaat
ctgaccgtcatagctgaggatcatgggatgccccagctgtccaccagtcaggttctgtct
gtccacgtgattgatgtgaacgatgagccgccgctgttccagggggaggagctagaggcg
gaggtcagagagaaccaggaagcgggaaccacggtgatcaccgtcacggcaacggataga
gaccaaggttctaatggccaggtgacatatggaggtgtaacagaggaaggtttcagcatc
aaccctgtgacaggagtcatcagcactaccaagaccctggacagagagattcaggaccac
tacacactcacagtgtatgccagggacgggggcctgcctcctaactttgccaaggtggtg
gtacgtgtgttggtgcaggatgagaacgacaacgtgccggtgttcgccaggccctggtac
ggcctagaggtccctgagagccagagcgccgtggagttgtgtattgtcagggctgctgac
gcagacactggcctcgctggagacatagagtacaggatcactgctggagacccagacggg
atcttccaactccatgtcagttcaggggccctgtccacgtctcgtcccctggatcgggag
ctgcgggcagggtacaacctggaggtggtggccctggaccatggttctcctgctctgagc
agcacagccacagtggaggtgaaagtgttggatgtaaatgacaacagtccggccttcagc
agcagcagctacaccatagacgtcccagaggacgctgcccagggaactacagtcttagag
gtgacggccacagacgcagacgatggggagaacgggaaggtgctgtatttcctgagtcaa
gaggcgaggggcgctttcaccgttgacgaaaacactggctgtattacaacggcgtcgccg
gtggaccgagagaagagggcgtcgtacagcttccgtgtgttcgctgtggacctgtcacct
gcagagcccagaaacacctcggctcaggtgactgtgacgatcctggacataaacgacaac
gctccattcttcatccaagaccccctcgttgtcgaggtctcggccagccaatcacatcgg
gtcctggccaccatgcgggccgaggacaaggactttggcgccaacggctctgtgttctac
cgttttgccggtcctgtgaggggtttcagcatcaactccctaacaggggagatccagggg
acagaggggatagacagactgagtcaggcccagaggaccctcatggtggaggctatggac
cagggaaccccggcccagtccagcctaggggtggtggtggtctatgtgaaggaacaggcg
tatactggcatcaggttctccaggaacgccagagacgtcagcatacaggagaacgccgcc
aaaggtacggctatagctcaggatcaggcccagtaccctgatgggacaagaagagggatc
agctatagcctcttctctggaaacagactgcaggccttcagcatcggcactagcacaggt
gaaatcagggttcagaggtcgttgggtctggactttgaggacactccgcgactccgcctg
gtagtgaaggctgcgacggcttcgtccagctccttcatggccgtcaacctgatcctgcag
gacatcaatgacaacctgccacgcttccagctccagaactatgtagcctacatgagagag
gcccagggttacgacatgccaatcatacaggtggtggcagaggacgtggaccaggggcag
aacggtcaggtgacctactctatccaatcatcaggaggcatgagcggcctgttcaagatc
gaccctgtcacgggaagcatcaccaccgccgccatcatggacagagagatctggactcag
accaggctggtcgtcacagcgacggacaggggcagcccgcgattggccggttcggccaca
ctcacagtgatcatcgtagacctcaacgacaacagtccaacaatccctctgccccgggag
gtccgcattcctgaaaacactctgatcggcacagagatcaccctggtaacgggtaatgac
gtggactccagcccggccctgtcctacagcctccagctggacgggtcgtcccaagggaag
tttgggattcaccgctacagtggaggggtgtctctgaccgcccctctggactacgaggac
agaacctggtacacactgaccgtcagggctactgactcccaacaccagactgaggctaat
atcaccatattggtggaggacgtcaatgacaacgctcctgcgttcacacacgatctatac
caggtaacactgccagaacattccccgccaggcagtcccgttgtcacggtgacggcgact
gatcgtgattcgggggagaatgggaaggtcacctacagagtgatgtcgtcaacgcgaggt
ggcttctacgtagaccccggcaatggtactctgttcatcagggagaggtcagagttcgat
ccagagaagctgtccgtcagtgtggtgattgaagcctgtgatgggggatccccgcccctc
tcctccttcaccacagtgcaggtccagctatcagacgtcaacgacaacgctcccgtcttc
caccagtcagagtacagggcgacggtgttggaggactccatccccggggcaaccatcctg
accctggaggccatggacgctgatttctctcgggacaactgcggcttcgacttcgccatt
gccaatggcaacaccgggaacgtcttccagatcgagagcagcgtgcgcttcctggagggg
cggggcttccagaccgtagggacgctcctattggccgaggtgctggacttcgaggccgtg
cccctctataacctgacggtggtggtgtcggacagaggggttccacagaggagttctagc
gttgccgcggtgataaccgttggcgatgtaaacgataacccgccggcgtttggcagggcg
gagtacgctgtgtcactgagtgaaggagctggcgccgggacagagataatacgactcact
gctacagacccagactctgcccccaacgcagaggtccagtacagcatcagctcaggcgat
gagatggacctgttcaccatcgaccagtggaccggggcgctgcggttacagcgacagctc
gaccgcgagcaccagtcctcccacgtggtcatcgtccaggcctcggatggccacggtcac
gtcgccctgaccccgatcagcgtagaggtcaaagatgtgaatgataacagaccgttcttc
cccatcgagactctgacggctagcatcagagagaacctgccggtcaactcagccgtgacc
atactccacgccatagaccacgacactgggatgtacggccagctgagatactacatggtg
gagcaaggtcaagggtcaggagttaccgggcgagaggccttcaccgtggaccagagttca
ggagaggtcagggctaagatgacttttgactttgagaaggtcaactcatttaattttgtt
gctctggcgatggacgccggtaaccactcggccacggtgacggtccaggtgtacgtgact
ggtgaggatgagtacgaccccctcttcgtctccccagagttctcctttgaggttccagaa
ggggcgaagaggggccagagcatcggacaggtccaggcaaacgacgaggacggaggtgta
gacggtatcgtcctcttctcgctcccaagctcctccctgtactttgacgtcaacaaaaca
accggggtggttttcctcaagatggacgggtcttctagtcgcagcagcagcagcgggtta
ggggggcggtccaaaagggagaccaggaccatgacactggacgttcacgcccacagccct
ctggacacgtcccgggtcaccacggcccagctgaccatcgatgtgaccaacacgtccttc
ggcctgggggcagacctcaacgtcctgctgattatcatcatcgccgtgtccctaggggtc
gtcgtgctactggtggtcatggcggtggtcatcttcctgctcaagtcaaagagacgcagg
aagaacaaaggacgggacaacagtgccgtggcctcgggaaccacgctgcagaaactggac
gattccaaatctggaggatctgagaggatctatcatcagacgttaccagggtacgccggc
gaccaaggtggagcaggggccgtgccctacccccgggggggttcccttgacccctcccac
tccagcggacgtggctcagccgaggcagcggaggacgatgagatcaggatgatcaacgag
tacccccgcgtagcgtccatctcctcgtccatgcaggagcacatctcagcccgcgggccg
gactctggcatccagcaggacgctgaccagctgtcggacatctcctgtgagccggccgcc
ctggaaggaagcacctggttcaaaggcaagaagctgggagggagtctcagcgggaccatg
ctgtctggacagctacctgtctacagagacgagctgggaggagggtacctgggggtgggg
aggggactcaacatctcccatcctaaagattacgcctttccagaggacgggaagccctct
gtagacgggtccctgacagccattgtggccagcgacgaagagctaaggggcagttataac
tgggactacctgctcaactggtgccctcagttccaaccactagccaacgtcttcacggag
atcgccaggctcaaagacgagacagccccacagaaccagaccaacccacgccagcccttc
cagcctaaagccaagacggaccccaagcctcgcatcgacccaccgcccctcatcactgcc
gtggcccaccctggggccaagtccgtccccccgaaggtccctgtcatcggacgcaccttc
ccccacctggccaccctacggcggtcccccattagccacgagggctccatctcctcagca
gccatgtcccccagcttctccccctctctctcccccctcgccgcccgcntccccgccgtc
tcccccttcggagtaacccagggtccctcgacctccatgatcagtaccagggatcccatg
ctggaccacagccccgatcacgagatgaggatctga
DBGET
integrated database retrieval system
