Oncorhynchus masou masou (cherry salmon): 135544227
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Entry
135544227 CDS
T10723
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
omm04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135544227 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
135544227 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135544227 (sympk)
03019 Messenger RNA biogenesis [BR:
omm03019
]
135544227 (sympk)
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135544227 (sympk)
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
135544227 (sympk)
U7-dependent histone pre-mRNA processing factors
135544227 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
HEAT_MROH2B_C
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
135544227
NCBI-ProteinID:
XP_064827754
LinkDB
All DBs
Position
8:16539233..16550612
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AA seq
1274 aa
AA seq
DB search
MNNKGSNKKMASNNGEAGGVRTSVASQFFNEDEDTAIVDMTTSEKVVDLLNQAALIATDS
KLTVLKQVQELIINKDPSLLDNFLDEIIAFQTDKSMEVRKFVIGFIEEACKRDNELLLKL
IANLNMLLKDESVNVVKKAILTLTQLYKVALQWFVRSKTMSDMQEACWDMVTQMKEEVLA
MLEVDNDGVRTHAIKFTESLIITLSPRTSDSDTPKRQEGDISLDKISKDHAYIRYDTLCG
EGKSALEQLLKFMVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLA
KSQVSSVRKNLKLHLMAVLKHPCSLEFQGQISTLLLDLGMSQNEITRHTPAPREPRKRPR
HEPYTEGKKLKIEPALIEDDEDKEEPAPPSISKPSSVPVVQSAIDLTAEFLRPLLSPENV
ANLVLISMVYLPDVMPASFQATYTPVESAGTDAQIKHLARMMATQMTAAGVGPGLEQCKA
RDEKAGKEEGMDEGIGESSKDLLIKRKVPVMGQAISVVGGGYGDKSQTETGEAPQVKRLP
EPILPSTQIKTPGTSGKRKVFRLADVIQPLTDTQLEKLTNMAVKRILHSEKAIAQSGMAH
VRVKLLSRLVTQFEGMMKDDVLEFILEDIRTRSDLAFSLLYQEYNTYLSQQPTGLLDSYD
HCLFTLLSGLQEKPEQRDGLFTKIVLEAPLITESALEVIRRYCEDESRVYLGMTTLKELI
VKRPSRQFQYLHVLLDLSSHEKEKVRSNALSFIKRMYEKDQLRDYIEKFALNYMQLLVHP
NPPSLLFGADKDTEVASPWTEDTVRQCLYLYLSLLPLNHRLVHELASVYTEAIADIKRSV
LRVIEQPIRGMGMKSPQLLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHK
RVPDVRFLIPVINGLEKKEVTQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPG
ELLISLHNVDSTKCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQSPLPILLMRTVI
QSLSMYPRLGGFVMNILSRLIVKQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTS
VFERCPEMREPLLQHVHSFTPHQQAHIPASIMTVLEANSKQPEPEAMQPVVLERQVETPI
ATIAANVTITPVATFTPVATPPVRAEPIPVRAEPIPVPLRDPEPALQQHLPSKKEEEEPM
EEGETAPACQEETADTTLQVDLPVVEENPTPDPIETVEEPMEEAPTEPSDVTDQLKDVTE
EGTTEPETGTGDAE
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaaggatctaataagaagatggcctcaaataacggagaagctggtggtgtg
aggaccagtgtggcatcacagtttttcaatgaagacgaggacacggctattgtcgatatg
accaccagtgaaaaggttgttgatctcctgaaccaagcagctcttattgctacagacagc
aaactcacggttctcaaacaggtccaggaattgatcatcaacaaggacccctctttactt
gacaatttcttagatgagatcatagcctttcagaccgataagtcaatggaagtaagaaag
tttgtcattggcttcattgaggaagcatgtaagagggacaacgagctcctgcttaaactg
attgccaacctgaacatgctgctgaaggacgaaagtgtcaatgtggtgaagaaggctatc
ctcactctcactcagctctacaaagtggcgctgcagtggtttgtgcgttccaagaccatg
tcagacatgcaggaagcatgctgggacatggtgactcagatgaaggaggaagttctggct
atgctggaagttgacaatgatggagtccgcactcatgctatcaagttcacagagtctctc
atcatcactctttcaccgaggacgtcagactctgacactcccaagcgccaagagggagac
atcagcctggataaaatctccaaagaccatgcctatatccgctacgataccctgtgcggg
gagggcaagtctgcgctggagcagcttctgaagtttatggtccaccctgctatctccagc
atcaacctgaccacagccctgggttccctggccacactggcccgacagaggcctatgttt
atgtctgaagtggtccaggcttatgaaactctgcatgccaacctacccccaacactggcc
aagtctcaggtgagcagtgtacgcaagaatctaaagttacacctgatggcagtgctcaag
cacccctgcagcctggagttccagggacaaatcagcactctgctcctagacctggggatg
tcccagaatgaaataacccgtcacacgccagccccacgtgaaccgcgcaaaaggccccgc
catgagccatacacagagggcaaaaagctcaagattgagcccgctcttatagaagatgat
gaagataaagaagagccagcccccccttccatctccaagccctcctctgtgccagtagtc
cagtcagccatcgacctcactgcagagttcttgcgccccctgctctccccagagaacgtg
gccaatctggttctaatcagcatggtgtacttgcctgatgtcatgccagcgtccttccag
gccacatacacaccagtggagtctgcaggaacagatgcccaaatcaaacacttggccaga
atgatggccactcagatgacagcagcgggagttggaccaggactggagcagtgcaaagca
cgagatgagaaagctggaaaggaggagggcatggatgaaggcataggggagtcctccaaa
gacctgctcatcaagcgtaaagtaccagttatgggtcaagccatctctgtggttggagga
ggctatggagataagagccaaactgaaacgggggaagccccccaggtcaagaggctgcct
gagcccatcctcccctccacacagatcaaaacacctgggacaagtgggaagaggaaagtg
ttcagattagctgatgtgatccagcctttgacagacacccagcttgaaaagttgaccaac
atggctgtcaagcgcatcctgcactcagaaaaagctatagcacagagtgggatggcccat
gtgcgcgtcaagctgctgtccagacttgtgactcagtttgaggggatgatgaaggatgat
gtgctggagttcattctggaggacattaggaccaggagcgacctggccttctctcttctc
taccaggagtataacacatacctcagtcagcagcccactggcttgttggacagctacgac
cactgcctcttcactctactgtccggcctgcaggagaagcccgagcagagggatgggctt
ttcacaaagattgtgctggaggctccgttaattacagagtctgctttggaagtaatacga
cggtactgtgaagatgagtcgcgggtgtacctcggcatgactactttaaaagagctgatt
gtaaaacggccctcaaggcagttccagtatctccatgtgcttctggatctcagctcacat
gaaaaggagaaggtgcgctccaatgccctgtccttcataaagcggatgtatgagaaagac
cagctgagggactatattgagaagtttgccctgaactacatgcagctcctcgtacaccct
aaccctccgtcgttactttttggggctgacaaggatacagaggtggcctccccctggaca
gaggacacagtgaggcagtgcctgtacctctacctgtcccttctgcctctcaaccaccgc
ctggttcatgagctggcctctgtctacactgaagccattgctgacatcaagcgcagtgtg
cttcgagtgatagagcagccaatccgtggaatggggatgaagtctccacagcttctgctg
ttggttgaaaactgtcctaaaggagcagagactctggtcactcgctgcctgcacattctc
actgataaagtgcctccgtcaccagagttggtggagagagtgagggatctgtatcacaaa
cgagtgcccgacgttcgtttcctaatccctgtcatcaacggcctggaaaagaaagaggtg
acccaggctcttcccaagcttatcaagctcaaccccattgtggtgaaggaagtcttcaac
cgtctcctgggcacccagcatagcgagggtagttcctcaatgtctcctctcacccctggc
gagcttctcatttctttacacaatgttgactcaacaaagtgtgacatgaagtccatcata
aaagccaccaacctgtgttttggggagaagaatgtgtacacgtcagaggtcctggctgtg
gtaatgcagcagctgatggagcagagtcctctccccattctgctgatgagaacagttatc
cagtccctcagcatgtacccccgcctgggaggcttcgttatgaacatcctgtcccgactc
attgtcaagcaggtgtggaagtatcctaaggtgtgggagggctttgtgaagtgctgccag
aggaccaagccgcagtcctacagcgtgctgctgcagctcccaccagcccagcttaccagt
gtgtttgagcgctgcccggagatgagggaacctcttctacagcacgtccactctttcacc
ccccaccagcaagcccacattcccgcctccatcatgacagtcctggaggccaacagcaag
cagccagaaccagaggccatgcagcctgtagtattggagagacaggttgagacacccatt
gcaaccatcgcagccaatgtaaccattacacccgttgcaaccttcacacctgttgcaacc
cctccagtacgggcagaacctattccagtacgggcagaacctattccagtaccgctgaga
gatccagagccagctctccagcagcatctgccaagtaaaaaagaggaagaggagcccatg
gaggaaggagagacggcccccgcttgtcaagaggaaactgcagacaccactttacaggtg
gatttgccagtagtggaagaaaaccccactccggatcctatagagaccgtggaggaacca
atggaggaggcacctactgaaccttcagatgtcactgaccaattaaaggatgtcaccgaa
gaaggtaccacagaacctgagactggcacaggagatgcagaatga
DBGET
integrated database retrieval system
