KEGG   Oncorhynchus masou masou (cherry salmon): 135544426
Entry
135544426         CDS       T10723                                 
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:omm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omm03041]
    135544426 (ythdc2)
Enzymes [BR:omm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     135544426 (ythdc2)
Spliceosome [BR:omm03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    135544426 (ythdc2)
SSDB
Motif
Pfam: YTH Helicase_C OB_NTP_bind HA2_C R3H DEAD Ank_2 HA2_N AAA_19 Ank ATPase nSTAND3 AAA_22 PhoH AAA_16 AAA_7 AAA_30 SRP54
Other DBs
NCBI-GeneID: 135544426
NCBI-ProteinID: XP_064828094
LinkDB
Position
8:24318742..24344559
AA seq 1460 aa
MSRPSNASPKPAMAKSKHSGGGGPRGKGLKDIRIDEEVKIAVNISLERFQYSEQKEMEFP
SSLSSTERAFIHRFAQSLGYISKSRGKGSSRTLTIRKKDGSETAQSIMTFNLSHNSKHAV
RSLLQRFPITNKERTDLLPRTERGLSVAIEAESSRDKNRTSGRLNNGIPQVPQKRGPSEL
DFFRSSLPVYERQEEIVQVIKDNRVVLVVGETGSGKTTQIPQFLLDDCSRNGIPCRIFCT
QPRRLAAIAVAERVAAERGESIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDTT
MSTVTHVIVDEVHERDGLSDFLLTKMRDMLQTMPNLKLILSSAALDVELFLRYFGSCPVI
HIKGRPFEVKQLFLEDILRTTGYSNKDMRKYKKEIQREEKQQMSLTEWCKVREGGSRQEP
QREKTTSASCVLQENDLLDDGGDSVFTQLNEKDVASLDPWLLKEMDACISDIFLNQDADA
FVQLFNLILSENVSVDYMHSETSATPLMVAAGRGFLSQIEQLLSMGASVRIKASNGWTAL
DWAKHFQQAEVVDLLESYLSSLEAGKLDEWSLVQAATTEMSPEDQELLKEYHHSFDDERV
DLDLIMHLLHNICTSSEDGAVLIFLPGYDEIVGLRDRILYDDKRFTDHSQRYQVFTLHSN
MQTSDQKKVLRNTPAGIRKIILSTNIAETSITVNDVVFVIDAGKVKEKSFDALNHVTMLK
MVWISKASSLQRKGRAGRCRPGICFHLFSRLRFNNMLEYQVPQLLRMPLQELCLHTKLLA
PITCSIAEFLSKAPEPPPILIVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKM
VLCAVVLKCLDPILTIACTLAHRDPFVLPSQASQKRASMLCRKRFTAGTFSDHMALLRAF
QAWQKARTDGWERSFCEKNFLSQATMEIIIGMRTQLLGQLRAIGFVRARGGGDIRDVNLN
SENWSVVKAALVAGMYPNLIHVDRESCSLSGAKEKRVRFHPTSILSQPQPHKKIPPANGQ
VAAVQSLPTDWLIYDEMTRAHRIASIRCCSVVSPITIAIFGGCAKLPSTALQEPAVQKDD
VVNESSDSEIEDRSTANMAQMKIDEWLNFKLDKEMVGLVFQLRQKWHGLFLRRIRSPSKP
WSQLDEATIRALVSVLGAEDQTAGLQQPTGIGQRPRPMSSEELPQTSSWRNANSRRTSGP
TASPDIPELPDEPLIPAPSHTATDRSSRLSPASALLHPKAPHGSRDRGSRRPTDDHSSTP
KSPESASLGFPSPCPSPSPTSSGKCSKSPSPRPGVAPVRYFIMKSSILRNIDISQQKGIW
STTPSNELKLNRAFLESSLVFLVFSVQGSGHFQGYARMTSVIGQERCQDWGSTGLGGVFS
VEWTRKESLPFQCTHQLLNPWNDNKKVQISRDGQELEPQAGGQLLQLWEKLSGKPQQPQQ
QHEVQQDPSLSSDNHRLHTT
NT seq 4383 nt   +upstreamnt  +downstreamnt
atgtcacgtccgagtaatgcctcacccaaacctgccatggccaaatcaaaacactctggt
ggtggggggcccaggggcaaagggctgaaagacatacgcatcgacgaagaagttaagatt
gctgtgaacatctcccttgagaggtttcagtacagtgagcaaaaagaaatggagtttcct
tcctccctgtctagtactgagagagccttcatccatcgctttgcacagtcccttggatat
atctctaaaagcagaggaaaaggatcaagccggaccctcactatcagaaagaaggatggc
tcggagacggctcagtccatcatgactttcaacctttcccacaattccaagcacgctgtg
cggagcctgctgcagaggttccccatcaccaacaaggagcgcacagacctactgcctcgc
actgagaggggcttgtctgtggccattgaggctgagagcagccgtgacaagaacaggacc
agtgggcggctcaacaacggcattccccaggtgccccagaagaggggcccatctgaactg
gacttcttccgcagctcacttcctgtgtacgagcgtcaggaggagatcgtccaggtcatc
aaagacaaccgtgttgtcctagtggtgggggagaccggctcggggaaaactacacagatc
ccacagttcctcctggatgactgcagccgaaatgggatcccctgtcggatcttctgcaca
cagccccggcgtctggcagccatcgctgtggcagagcgggttgctgcggagagaggggag
agcattggtcagaccattggctaccagatccgcctggagagcagagtttctcctaagacg
ctgctgaccttctgcacaagcggagtcctgctgagaacactgatggccggagacaccaca
atgtccactgttactcacgtcattgtggatgaggttcatgagcgggatggtctgagtgac
ttcctgctgaccaagatgagggacatgctccagacgatgcctaatctgaagctcatcctg
tccagtgctgccctggacgtggagctgttcctccgctactttggctcctgtcctgtcatc
cacatcaaaggaagaccatttgaggtgaagcaacttttcctggaagacatcttgaggaca
acaggctattcaaacaaagacatgaggaaatacaaaaaggagatccagagggaggaaaag
caacagatgtctttgacagagtggtgtaaggtgcgtgagggtggctcccgccaggagccc
cagagggagaagaccacctcggcctcctgtgtccttcaggagaacgacctgctagacgat
ggaggggacagtgttttcacccagctgaatgagaaagatgtggcatcattggacccgtgg
ctgctgaaggagatggatgcctgcatctcagacatcttcctcaaccaggacgctgacgcc
ttcgtccagctcttcaatctcatcctgagtgagaacgtcagcgtggactacatgcacagt
gaaacgagcgccactccactcatggtggcagcaggtcgaggcttcctcagtcagattgag
cagcttttgagtatgggagccagcgtcagaatcaaggcctccaatggctggactgcgctg
gactgggccaagcacttccagcaggcagaagtggtggacctactagaatcctacctctca
tccctggaggcggggaagctggacgagtggtccctggtgcaggctgccaccacagaaatg
agtccggaggaccaggagctgctcaaggaataccaccacagctttgacgatgagagggtg
gacctggacctcatcatgcacctgctacacaacatttgcaccagctcagaagacggtgcg
gttttgatcttcctccccggatacgatgagatagtgggtctgagggaccgtatcctgtac
gacgataaaagattcacagaccactctcaaaggtaccaggtctttacactccactccaac
atgcagacctcggatcagaagaaagtgctgaggaacactccagctggtattcggaaaata
attctctccactaacatcgcagagacgagtatcactgtcaacgatgtcgtatttgtcatt
gacgcaggaaaagtaaaagagaagtcctttgatgccctgaaccatgtgaccatgctgaag
atggtgtggatctccaaggccagctctcttcagaggaagggcagagctggacgttgccga
ccagggatctgcttccacctcttcagtcgtctccgctttaacaacatgctggagtaccag
gtgccccagctactgaggatgcccctgcaggaactctgtctccacaccaagctgttggcc
ccaatcacctgttccatcgctgaattcctgtccaaagcacccgaaccaccccccatcctc
attgtaaaaaacgcggtgcagatgctcaagaccatagacgccatggacccatgggaggac
ctgacggagctgggctaccacctggctgacctgcctgtggagccccacctgggaaagatg
gtgttgtgtgccgtggtgctcaagtgcctagaccccatcttgaccatcgcctgcacactg
gcccatcgcgacccctttgtgctgccctcccaggcctcccagaagagggcatccatgctg
tgccggaagcgctttactgcagggacattcagcgaccatatggccctgctccgagccttc
caggcttggcagaaggcccgcacagatggctgggaaaggtccttctgtgagaagaacttc
ctgtcccaggctaccatggagatcatcatagggatgaggacccagctgctaggacagctc
cgagccataggctttgtgcgggcacggggcggcggggacatccgtgacgtgaacctgaac
tctgagaactggtcagtggtgaaggcagccctggtggccggaatgtaccccaacctgatc
catgtggaccgtgagagctgttctctgtctggggccaaggagaagagggtccgcttccac
cccacctccatcctcagccagccacagccccacaagaagatccccccagccaatggtcag
gtggcagccgtccagtccctgcccaccgattggttgatctatgacgagatgacgcgagcc
cataggatagccagcatccgctgctgctctgtggtctcccccataaccatagccatcttc
gggggctgtgccaaactgcccagcacagccctacaagagcctgctgttcagaaagatgat
gtggtgaatgagagcagtgacagtgagattgaggatcgctccacagccaacatggctcag
atgaagatcgatgagtggctcaacttcaaactggacaaagagatggtgggtctggtgttc
cagctgaggcagaagtggcacggtttattcctgaggaggatccgctccccctccaagccc
tggtcccagctggatgaggccaccatacgggccctggtgtcggtgctgggggctgaggat
cagactgcagggctgcagcagcccacagggattggccagaggccccggcccatgtcctct
gaggagctcccccagacctcctcctggaggaacgccaacagcaggagaacctccggcccc
acagccagccctgacatcccggagctccctgacgaacccctcatccccgccccgtcacac
acagccacagacaggtcctcaagactctcccctgcctcggccctcctgcaccccaaagcc
ccccatggcagcagggacaggggctccaggcgccccacagacgaccactcctccaccccc
aagtctcctgaatcggcttcactcggcttccccagcccctgtcccagcccctcacccacc
tcatcaggaaagtgctccaagtctccgtccccaaggccaggcgttgcaccggtgcgttac
ttcatcatgaagagcagcatcctgaggaacattgacatctcccagcagaaaggcatctgg
tccaccacgcccagcaacgagctcaaactcaacagagccttcctggagagcagccttgtc
ttcttggtcttctctgtgcagggttccggacacttccagggctatgcacggatgacgtcg
gtcattggacaggagcgctgtcaggactggggctccacagggctggggggggtcttcagc
gtggagtggaccaggaaggagagcctgcccttccagtgtacccaccagctgctcaacccc
tggaatgacaacaagaaggtgcagatcagcagagacggacaggagttggagccccaggct
ggaggccagctgctgcagctatgggagaaactctcagggaaaccacagcaaccacaacag
caacatgaggtacaacaggacccatctttatcatcagataaccacaggttacacacaacg
tga

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