Oncorhynchus masou masou (cherry salmon): 135544426
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Entry
135544426 CDS
T10723
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135544426 (ythdc2)
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135544426 (ythdc2)
Spliceosome [BR:
omm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135544426 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
ATPase
nSTAND3
AAA_22
PhoH
AAA_16
AAA_7
AAA_30
SRP54
Motif
Other DBs
NCBI-GeneID:
135544426
NCBI-ProteinID:
XP_064828094
LinkDB
All DBs
Position
8:24318742..24344559
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AA seq
1460 aa
AA seq
DB search
MSRPSNASPKPAMAKSKHSGGGGPRGKGLKDIRIDEEVKIAVNISLERFQYSEQKEMEFP
SSLSSTERAFIHRFAQSLGYISKSRGKGSSRTLTIRKKDGSETAQSIMTFNLSHNSKHAV
RSLLQRFPITNKERTDLLPRTERGLSVAIEAESSRDKNRTSGRLNNGIPQVPQKRGPSEL
DFFRSSLPVYERQEEIVQVIKDNRVVLVVGETGSGKTTQIPQFLLDDCSRNGIPCRIFCT
QPRRLAAIAVAERVAAERGESIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDTT
MSTVTHVIVDEVHERDGLSDFLLTKMRDMLQTMPNLKLILSSAALDVELFLRYFGSCPVI
HIKGRPFEVKQLFLEDILRTTGYSNKDMRKYKKEIQREEKQQMSLTEWCKVREGGSRQEP
QREKTTSASCVLQENDLLDDGGDSVFTQLNEKDVASLDPWLLKEMDACISDIFLNQDADA
FVQLFNLILSENVSVDYMHSETSATPLMVAAGRGFLSQIEQLLSMGASVRIKASNGWTAL
DWAKHFQQAEVVDLLESYLSSLEAGKLDEWSLVQAATTEMSPEDQELLKEYHHSFDDERV
DLDLIMHLLHNICTSSEDGAVLIFLPGYDEIVGLRDRILYDDKRFTDHSQRYQVFTLHSN
MQTSDQKKVLRNTPAGIRKIILSTNIAETSITVNDVVFVIDAGKVKEKSFDALNHVTMLK
MVWISKASSLQRKGRAGRCRPGICFHLFSRLRFNNMLEYQVPQLLRMPLQELCLHTKLLA
PITCSIAEFLSKAPEPPPILIVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKM
VLCAVVLKCLDPILTIACTLAHRDPFVLPSQASQKRASMLCRKRFTAGTFSDHMALLRAF
QAWQKARTDGWERSFCEKNFLSQATMEIIIGMRTQLLGQLRAIGFVRARGGGDIRDVNLN
SENWSVVKAALVAGMYPNLIHVDRESCSLSGAKEKRVRFHPTSILSQPQPHKKIPPANGQ
VAAVQSLPTDWLIYDEMTRAHRIASIRCCSVVSPITIAIFGGCAKLPSTALQEPAVQKDD
VVNESSDSEIEDRSTANMAQMKIDEWLNFKLDKEMVGLVFQLRQKWHGLFLRRIRSPSKP
WSQLDEATIRALVSVLGAEDQTAGLQQPTGIGQRPRPMSSEELPQTSSWRNANSRRTSGP
TASPDIPELPDEPLIPAPSHTATDRSSRLSPASALLHPKAPHGSRDRGSRRPTDDHSSTP
KSPESASLGFPSPCPSPSPTSSGKCSKSPSPRPGVAPVRYFIMKSSILRNIDISQQKGIW
STTPSNELKLNRAFLESSLVFLVFSVQGSGHFQGYARMTSVIGQERCQDWGSTGLGGVFS
VEWTRKESLPFQCTHQLLNPWNDNKKVQISRDGQELEPQAGGQLLQLWEKLSGKPQQPQQ
QHEVQQDPSLSSDNHRLHTT
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtccgagtaatgcctcacccaaacctgccatggccaaatcaaaacactctggt
ggtggggggcccaggggcaaagggctgaaagacatacgcatcgacgaagaagttaagatt
gctgtgaacatctcccttgagaggtttcagtacagtgagcaaaaagaaatggagtttcct
tcctccctgtctagtactgagagagccttcatccatcgctttgcacagtcccttggatat
atctctaaaagcagaggaaaaggatcaagccggaccctcactatcagaaagaaggatggc
tcggagacggctcagtccatcatgactttcaacctttcccacaattccaagcacgctgtg
cggagcctgctgcagaggttccccatcaccaacaaggagcgcacagacctactgcctcgc
actgagaggggcttgtctgtggccattgaggctgagagcagccgtgacaagaacaggacc
agtgggcggctcaacaacggcattccccaggtgccccagaagaggggcccatctgaactg
gacttcttccgcagctcacttcctgtgtacgagcgtcaggaggagatcgtccaggtcatc
aaagacaaccgtgttgtcctagtggtgggggagaccggctcggggaaaactacacagatc
ccacagttcctcctggatgactgcagccgaaatgggatcccctgtcggatcttctgcaca
cagccccggcgtctggcagccatcgctgtggcagagcgggttgctgcggagagaggggag
agcattggtcagaccattggctaccagatccgcctggagagcagagtttctcctaagacg
ctgctgaccttctgcacaagcggagtcctgctgagaacactgatggccggagacaccaca
atgtccactgttactcacgtcattgtggatgaggttcatgagcgggatggtctgagtgac
ttcctgctgaccaagatgagggacatgctccagacgatgcctaatctgaagctcatcctg
tccagtgctgccctggacgtggagctgttcctccgctactttggctcctgtcctgtcatc
cacatcaaaggaagaccatttgaggtgaagcaacttttcctggaagacatcttgaggaca
acaggctattcaaacaaagacatgaggaaatacaaaaaggagatccagagggaggaaaag
caacagatgtctttgacagagtggtgtaaggtgcgtgagggtggctcccgccaggagccc
cagagggagaagaccacctcggcctcctgtgtccttcaggagaacgacctgctagacgat
ggaggggacagtgttttcacccagctgaatgagaaagatgtggcatcattggacccgtgg
ctgctgaaggagatggatgcctgcatctcagacatcttcctcaaccaggacgctgacgcc
ttcgtccagctcttcaatctcatcctgagtgagaacgtcagcgtggactacatgcacagt
gaaacgagcgccactccactcatggtggcagcaggtcgaggcttcctcagtcagattgag
cagcttttgagtatgggagccagcgtcagaatcaaggcctccaatggctggactgcgctg
gactgggccaagcacttccagcaggcagaagtggtggacctactagaatcctacctctca
tccctggaggcggggaagctggacgagtggtccctggtgcaggctgccaccacagaaatg
agtccggaggaccaggagctgctcaaggaataccaccacagctttgacgatgagagggtg
gacctggacctcatcatgcacctgctacacaacatttgcaccagctcagaagacggtgcg
gttttgatcttcctccccggatacgatgagatagtgggtctgagggaccgtatcctgtac
gacgataaaagattcacagaccactctcaaaggtaccaggtctttacactccactccaac
atgcagacctcggatcagaagaaagtgctgaggaacactccagctggtattcggaaaata
attctctccactaacatcgcagagacgagtatcactgtcaacgatgtcgtatttgtcatt
gacgcaggaaaagtaaaagagaagtcctttgatgccctgaaccatgtgaccatgctgaag
atggtgtggatctccaaggccagctctcttcagaggaagggcagagctggacgttgccga
ccagggatctgcttccacctcttcagtcgtctccgctttaacaacatgctggagtaccag
gtgccccagctactgaggatgcccctgcaggaactctgtctccacaccaagctgttggcc
ccaatcacctgttccatcgctgaattcctgtccaaagcacccgaaccaccccccatcctc
attgtaaaaaacgcggtgcagatgctcaagaccatagacgccatggacccatgggaggac
ctgacggagctgggctaccacctggctgacctgcctgtggagccccacctgggaaagatg
gtgttgtgtgccgtggtgctcaagtgcctagaccccatcttgaccatcgcctgcacactg
gcccatcgcgacccctttgtgctgccctcccaggcctcccagaagagggcatccatgctg
tgccggaagcgctttactgcagggacattcagcgaccatatggccctgctccgagccttc
caggcttggcagaaggcccgcacagatggctgggaaaggtccttctgtgagaagaacttc
ctgtcccaggctaccatggagatcatcatagggatgaggacccagctgctaggacagctc
cgagccataggctttgtgcgggcacggggcggcggggacatccgtgacgtgaacctgaac
tctgagaactggtcagtggtgaaggcagccctggtggccggaatgtaccccaacctgatc
catgtggaccgtgagagctgttctctgtctggggccaaggagaagagggtccgcttccac
cccacctccatcctcagccagccacagccccacaagaagatccccccagccaatggtcag
gtggcagccgtccagtccctgcccaccgattggttgatctatgacgagatgacgcgagcc
cataggatagccagcatccgctgctgctctgtggtctcccccataaccatagccatcttc
gggggctgtgccaaactgcccagcacagccctacaagagcctgctgttcagaaagatgat
gtggtgaatgagagcagtgacagtgagattgaggatcgctccacagccaacatggctcag
atgaagatcgatgagtggctcaacttcaaactggacaaagagatggtgggtctggtgttc
cagctgaggcagaagtggcacggtttattcctgaggaggatccgctccccctccaagccc
tggtcccagctggatgaggccaccatacgggccctggtgtcggtgctgggggctgaggat
cagactgcagggctgcagcagcccacagggattggccagaggccccggcccatgtcctct
gaggagctcccccagacctcctcctggaggaacgccaacagcaggagaacctccggcccc
acagccagccctgacatcccggagctccctgacgaacccctcatccccgccccgtcacac
acagccacagacaggtcctcaagactctcccctgcctcggccctcctgcaccccaaagcc
ccccatggcagcagggacaggggctccaggcgccccacagacgaccactcctccaccccc
aagtctcctgaatcggcttcactcggcttccccagcccctgtcccagcccctcacccacc
tcatcaggaaagtgctccaagtctccgtccccaaggccaggcgttgcaccggtgcgttac
ttcatcatgaagagcagcatcctgaggaacattgacatctcccagcagaaaggcatctgg
tccaccacgcccagcaacgagctcaaactcaacagagccttcctggagagcagccttgtc
ttcttggtcttctctgtgcagggttccggacacttccagggctatgcacggatgacgtcg
gtcattggacaggagcgctgtcaggactggggctccacagggctggggggggtcttcagc
gtggagtggaccaggaaggagagcctgcccttccagtgtacccaccagctgctcaacccc
tggaatgacaacaagaaggtgcagatcagcagagacggacaggagttggagccccaggct
ggaggccagctgctgcagctatgggagaaactctcagggaaaccacagcaaccacaacag
caacatgaggtacaacaggacccatctttatcatcagataaccacaggttacacacaacg
tga
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integrated database retrieval system