Oncorhynchus masou masou (cherry salmon): 135545008
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Entry
135545008 CDS
T10723
Name
(RefSeq) whirlin-like
KO
K21879
whirlin
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
omm03037
]
135545008
Cilium and associated proteins [BR:
omm03037
]
Primary cilia and associated proteins
USH complex and associated proteins
135545008
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
USH1C_N
DUF6288
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
135545008
NCBI-ProteinID:
XP_064828749
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Position
1:complement(44215420..44325723)
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AA seq
1024 aa
AA seq
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MMSSDLERVSLNSTTANSGIGSGGRALSANVRKLHNALNLLLTDFEREQFIHCLNVYHAK
RNVFDLVQTLKIILNTPNKRQLLPMLRLVIPRSDQLLFDQYTSEGLYLKTDHLPQNSGNN
PESSEGEVGNAANHHVQIPTAHCMNPHDLSCYASSGACPGKDGFSTTVDGTAPQAFIQGE
PFGEIRQVTLRRRKSNEGLGFSIRGGSEHDVGIYVSLVEPGSFAENEGLRVGDQIVTVND
MLFDRLSHMEAVKVLKGCKKLAMSVCSVGRIPGGYITNHIYTWVDPQGRSVSPPSDLEKQ
EQHSTLGRQDSQRRGHTQERAEKTITLNLNDGLSLGLMIRGGAEYGLGIYITGVDPGSAA
DHGGLKVGDQLLEVNGRSFVAIPHDEAVRILKTCRHLLVRVRDVGRLPHARTVVDQTKWV
SSPSPPSPPPIAESTASPATTRPSSARATPVLGKSVCRGVWPPGSQVSLEEQAFLLLTDP
ERQTMVYYLQEYQEGHIGLEPLAMALFELFNTHAKLSLLSEVRSLVAPQDLEVYDGLVLH
REREALKAWHGETGTLHPHSHCVHTEPSASHSHCVHTEPSARHSHSNPTTLCSAKKKVRS
TAESPPSFKSSLPSGHTQTRNPKERDPSKRPSSSHSQSGLIFTAPTRLHQECHHKSLKAF
SSSNHQTSTSPSSGLHHTCPNPGHQNSPNPGTNHSANLSSGHQTSINSLHHTCQNSLHIS
TPTSDHHPHQGCPTSGHHTCPGSLDHNSLSFPSALPTQETTIKHPIFRSSSHEKPATSHK
TASPCLSPCPSPGLSPCLSPCPSPCPSLVVLKPPPCSPDRPCSPCSPSLSQGGQCVMAGV
HRLTAEVRPQPQQRGATLSQLSDSGQTLSEDSGVDIAEAGGLSKDSSPRPSKNQATQQSQ
VAQGPAALASKQQPGSPVPTPTLVHVVKNANTLGIAIEGGANTRQPLPRIVTIQKGGSAH
GCGQLKVGQVILEVNGVSLRGREHQDAACIIAEAYKSKERDHIDFLVTEFNATLLQGLLQ
GHIH
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcagtgatttggagcgcgtttcactcaattcaacgacggctaactcgggaatt
gggtcgggtggccgcgcgctgtcagcaaacgttcggaagctgcacaacgcgctcaacctg
ctgctcacagactttgagagagaacagttcatacactgtctaaatgtttaccatgcaaag
cgcaacgtcttcgatttagttcaaactctcaaaataatcctcaacacgccaaacaaacga
caactcctccccatgttgcggttggtcattccgcgctcagaccagctgttgtttgaccag
tatacttccgagggcctgtaccttaaaacggaccatctaccgcaaaacagtggtaacaac
cctgaaagctccgaaggagaagtaggcaatgctgcaaaccaccatgtccaaattcccact
gctcactgtatgaaccctcatgatctctcttgttatgcatcatcaggagcgtgtcccggc
aaggatggtttcagcaccactgttgatgggaccgctccccaggctttcatccagggggag
ccttttggagagatccgccaagtgacactgagacgcagaaagagcaatgagggtttaggg
ttcagcatccggggaggctccgagcacgacgtgggaatatatgtgtcgctagtagaaccc
ggatcttttgctgagaatgagggattgagggtcggtgatcaaatagtgactgttaacgac
atgctgtttgacagactctcacacatggaggcagtcaaggtcctgaagggctgtaagaag
ctcgccatgtcagtgtgttctgtgggccgtatccctggcggttatatcaccaaccacatc
tacacctgggtggaccctcagggccgcagtgtctcccctccctccgacctggagaagcag
gagcagcacagcaccctgggacggcaggacagtcagagacgtggacacacacaggagagg
gctgagaagacgatcaccctaaacttgaacgatggtctctctctgggcctgatgatcaga
ggaggggcagagtacggcctgggcatatacattactggagtggacccaggctcagccgca
gaccacggtggactcaaggtgggcgaccagctgctggaggtgaatgggcggagcttcgtg
gccatcccccatgatgaggcggtgaggatcctgaagacgtgtcgccacctgctggttagg
gtgagagacgttggccgcctgccccatgcccgcaccgtggtggaccagaccaaatgggtc
agcagccctagcccccccagcccaccgcccatagcagagagcaccgccagcccggctaca
acacggccatcttcagcgcgggctacacctgtattaggaaagtcagtgtgtcgaggtgtg
tggcccccaggttcccaggtgtctctggaggagcaggcctttctgctgctgacagaccca
gagaggcagaccatggtttactacctgcaggagtaccaggagggacacatcggtctggaa
cccctggctatggccctgtttgaactcttcaacacccacgccaagttgtccttgctgtct
gaggtgcgtagcctggtggctccccaggacctggaggtgtatgatggtctggtgctgcac
cgtgagagggaggctctgaaggcctggcatggagaaacaggaacgttgcatccacacagc
cactgtgtgcacacagagccctcagccagccacagccactgtgtgcacacagagccctca
gccagacacagccactccaaccccaccactctctgctctgccaagaaaaaagtgcggtct
acagctgaatctcctccgtccttcaagtcatcacttccctccggccatacccagacgaga
aaccccaaggagagggacccttccaagcgtccctcatccagtcactcccagtctggcctg
atctttactgcccccaccaggctacatcaggaatgtcaccacaaatccctcaaagcattc
agctcctccaaccatcaaacctccacctccccgagttctggcctccatcacacctgtccc
aaccctggccaccaaaacagccccaaccctggcaccaaccacagtgccaatctaagctct
ggtcatcagacatccataaactctcttcaccacacctgccaaaactccctccacatctcc
acccccacctctgaccaccatccccaccaaggctgccccacctctggccaccatacctgc
cccggctcccttgatcacaactccttgtcattcccctctgctcttccaacccaggagaca
accatcaagcaccccatcttcagatcctcttcccatgagaagcctgctacctcccataag
actgcctccccttgtctctcaccgtgtccctcccctggtctctccccatgtctgtccccc
tgtccctcgccctgtccctctctcgttgtcctgaagccgcccccatgtagcccagacaga
ccctgctctccctgttctccctccctcagccagggaggtcagtgtgtcatggcaggcgta
cacagactgactgctgaggtcaggccccagccccagcagagaggtgccacattgtcccaa
ctgtcagacagtggtcagactctgagtgaggacagtggggtggacattgctgaggcagga
gggctgagtaaagacagcagtcctcggcccagtaagaaccaggccacacagcagtcccaa
gtggcccagggacctgcagcactggcatccaaacagcagccaggctctccagtgcccacc
cctaccctggtacatgtagtaaagaatgccaatactctgggtatcgctatagagggaggg
gcaaacacacgccagccgctgccacgcatcgtcaccatacagaaggggggctcggcacac
ggttgtgggcagctgaaggtgggtcaggtgattctggaagtgaacggtgtctccctgagg
ggccgtgagcaccaggacgctgcttgcatcatcgctgaggcctacaagtccaaagagagg
gaccacattgacttcctggtcacagagttcaacgcaaccctcctgcagggccttttgcag
ggtcatattcattag
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