Oncorhynchus masou masou (cherry salmon): 135545651
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Entry
135545651 CDS
T10723
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135545651 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135545651 (polr1a)
Enzymes [BR:
omm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135545651 (polr1a)
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
135545651 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
YceG
Motif
Other DBs
NCBI-GeneID:
135545651
NCBI-ProteinID:
XP_064829486
LinkDB
All DBs
Position
9:19335007..19347780
Genome browser
AA seq
1703 aa
AA seq
DB search
MLFGKEVPWRRLEGITFGMYTAEEIRKLSVKNITNFRFLDNVGNVAPNGLYDLSLGPADS
KEVCSTCMQDFNNCPGHLGHIELPLPVYNPLLFDKLYLLIRGSCLNCHMLSCPRAAIHLL
LNQLKLLDVGALQEVYELEHVLNQFLEGNAQASGVEIQVVLEDYCAHVNKLKTGNDHSSP
IKHICEKKNKLITLFWRVQMNSRKCPHCKSGRSQVRREHNSKLIVTLPAAMYKDGAIKGP
DEEDGMAGKRGYLTPSTARDHIAKLWDKEGFFLKCLFSGLEELESSPSGFYPDLFFLELM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDSGVIQKLLALLAGEKLKEKELQLEEVQE
ADPSQTDQAFLAGIPGATLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKK
DGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGVPMVFATKLTYPQPVTPWNVKELRQAV
LNGPNVHPGASMVINEDGSRTILSSTNLTQREAIAKQLLTPCTGQHMMPMKIVNRHIKNG
DVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR
AEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVYRGLTDKV
GRVKLLPPAILKPFPLWTGKQVVSTLLMNVIPGNHIPLNLTGKAKIPSKAWIKESPRCVP
GYKPETMCDSQVIFRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF
TAYLQLYRGFTMGVEDILVKRGANRQRKQIINESVTCGTKALQAAFNLPDTVDESEARGR
WQDAHLNPDQRDFNMVDLKFKEVANQVNNDINKVVMPLGLHCSFPENNLQLMVQSGAKGS
TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSPRSGGFVSGRFLTGIKPPEFF
FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD
VPKTQFLQPRQFPFIQDNYEVIRKSKCLDEVLAKLDPQAATNHFKAIRKWKAKREHLSPR
EGAFLLFSQKKLKKAERQALENLANGRDTATLKLVDRWSSLDQDSRSKYLKKTSHCPEPC
LSLFRPDISFGSVSETFESIVESYLKDIQVKQLPEGSSKNLDAQRLKHLLQLKWQRSLCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSSIKTPMMSI
PVLNSKKAIKRVKTLRKKLTRVCLAEVLHKVDVLETLRVKNKQQKDRVFKIIFRFLSPER
YQEDKMLTPHQILHYMENRFFRLLLEAIKKRNTKLASINAVETRKATVRDNDQDVGDSSA
RQESGEGDGEEESMIVDDVGNEGDADASDAKRRENQEEEVDYESEEGEDAEGEDLVEEKE
EPAEENSEEVPDEVPGDLATEEPGGAGARKRSKQKSTHTQDSMRVNTVLETSSSIEDYSY
DSQQGLWCEVTLILPVSKVHFDLTSLVVAVAQNAVVMETKGITRCLLSEVTKKDGSKELE
LKTEGINMHELFNHSEILDVNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVD
PRHLSLVADYMCFEGVYKPLNRFAIQSNSSPLQQMTFETSYKFLKQATMLGSHDKLVSPS
ACLVVGKVVKGGTGIFDLKQPLQ
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgggaaagaagtaccatggaggcggctggagggaattacatttggaatgtac
actgcagaagaaataagaaagttgagtgtcaagaacataaccaacttcagattcctggat
aatgttggtaatgttgcccccaatggcctctatgacctgtcattgggcccagctgattcc
aaagaggtgtgctccacctgtatgcaagacttcaacaactgccctgggcaccttgggcac
attgagctacccttacccgtatacaacccactcttatttgataaactgtacctgctgatc
cgagggtcatgtctgaactgccacatgctgtcctgccccagagcagcgatacatctcctg
ctgaaccagctgaagctgctggatgtgggagctctacaggaggtctatgagctggagcat
gtgctgaaccagttcttggaaggcaatgcccaagcttctggggttgagatccaggtggtg
ttagaggactactgtgctcatgtcaacaaactgaagacaggcaacgatcacagctcacca
atcaagcatatctgtgagaagaagaacaagcttataacactcttctggagggtccaaatg
aactccaggaaatgccctcactgcaagagtggacgatcacaagtgcgcagggagcacaac
agcaaactgattgtcaccttgcctgcggctatgtataaagatggtgccatcaagggaccc
gatgaagaagatgggatggctggaaaacgtggatacttgacccctagcacggcacgggat
cacatcgccaaactttgggataaagaaggtttcttcctgaagtgcttgttctctggactg
gaggagttggagagctcacccagtggcttttaccctgaccttttcttcctggagcttatg
gtggtccctccatgcaggtatcggcccattaaccgtctgggagaccagatgttcactaat
ggccagacggttaacatgcaggcagtgatgaaagacagtggcgttatccagaagctccta
gcacttctagctggagaaaagctgaaggaaaaggagttgcagctggaggaggtacaggaa
gccgacccctctcagacagaccaggccttcctggcagggatccccggtgccacactcaca
gataaactctacaacacctggattcggctccagagtcacgtcaatatagtctttgacagt
gacatggacaaactgatgactgagaagtaccctggcattcgtcagatcttagagaagaag
gatggtttgttcaggaagcacatgatgggtaaacgtgtggactatgcagcacgctctgtt
atttgtcctgacatgtacattgggaccaatgagattggagtacccatggtgtttgccacc
aagctgacttacccccaacctgtgacgccttggaatgttaaggagctgaggcaggcagtt
ctgaacgggcccaatgttcaccctggggcctccatggtcattaacgaggacggctcccgc
accatcctgagcagtactaacctcacccagagagaggccatcgccaagcagctcctcaca
ccctgcaccgggcagcacatgatgcccatgaagatagtgaatcgtcacatcaagaatggc
gacgtcctgctcctcaaccggcagccaacactgcatcggccgtccatccaggctcactgc
gcccgcatcctgccaggggagaaagtgttaaggcttcactacgctaactgtaaggcctac
aacgctgactttgatggggatgagatgaatgcccatttccctcagagtgaactgggcagg
gctgaggcctacacactcgtcagcactgaccagcagtaccttgtgcccaaggatgggaag
cctctggcaggtctgatccaggatcacatggtgtcaggcactaggatgaccatccgcggc
tgcttcttctcccgtgaccagtacactgagctggtctaccgaggtctgaccgacaaggtc
ggcagagtcaagctactgccgcccgccatactcaaaccattccctctctggactgggaaa
caggtggtgtctacactactgatgaacgtcatcccaggaaaccacatccctctgaacctg
acagggaaggccaagatccccagtaaggcctggatcaaggagtctccacgctgtgttccc
ggctacaagcctgaaaccatgtgtgactcccaggtgatctttcgtcagggagagttgctg
gtcggggtgttggacaaggcccactatggcagctcagcatacggcctggtccactgctgc
tacgagctatatggaggagagaccagtggtaaactcctcagctgcctggctcgcctcttc
actgcctacctccagctgtaccgggggttcactatgggtgtggaggatatcttggtgaaa
cgaggagccaacagacagagaaagcagatcataaatgagtctgtcacgtgtgggactaag
gccttgcaggcagcctttaacctgcctgacaccgtggacgagagtgaggctaggggccgc
tggcaggacgcccacctcaacccagaccagagagacttcaacatggtggacctcaagttt
aaggaggtggccaatcaggtcaacaacgacatcaacaaggtggtcatgcccctgggtctc
cactgcagcttccctgagaacaacctccagctgatggtgcagtctggggctaaaggctcc
actgtcaataccatgcagatctcctgtctgctgggtcagattgagctggagggtcgacgt
cctcccctgatgccttctgggaaatctctgccatgcttccagccgtatgaaagttcgccc
cgctctggaggttttgtgtctggcaggttcctgacaggaatcaagcccccggagtttttc
ttccattgcatggctggccgggagggtctggtagatacagctgttaagaccagtcgatca
gggtaccttcagagatgtgtgatcaaacacttggagggcctggtggttcagtatgacctg
actgtgagggacagtgatggcagcgtggtccagtttctctatggagaggatggcctggac
gtccccaagacacagttcctccagccaaggcagtttcccttcatacaggacaactatgag
gtcatcagaaagtccaagtgcttggatgaggtcctggccaaactggaccctcaggctgcc
accaaccatttcaaagccatcaggaagtggaaagccaagagggagcatctttctcccagg
gagggggccttcctgctcttctcccagaagaaactgaagaaggcagagcgccaggctcta
gagaacctggccaatggcagggatactgccactctgaagttggtggatagatggagttct
ctagaccaggacagcagatctaagtacctgaagaagacttcacactgtcctgagccctgc
ctgagcctgttcaggcctgacatctcatttgggtcagtgtcagagacgtttgaaagcatt
gtggagtcctatctaaaggacatccaagtcaagcagttacctgagggaagctcaaagaac
cttgatgcacaaagactaaagcatctgctgcagctgaagtggcagcgatccctgtgtgac
ccaggggaggcggtgggtctgctggctgctcagagcatcggagagccctccacccagatg
accctcaacaccttccattttgccggcaggggggagatgaacgttaccctcggtatccca
aggcttagagaaatattaatgattgccagttccagcatcaagactccgatgatgagtatt
cctgtgttaaacagtaaaaaagccatcaagcgggtgaagacactcaggaagaaactgact
cgcgtgtgtctagctgaggtgttgcacaaagtggatgtcctggaaacactccgggtgaag
aacaaacaacagaaggaccgcgtcttcaagatcatcttccgctttctctccccagagcgc
taccaggaagacaagatgttgactccccatcagatcctccactacatggagaacagattc
ttccgcctactactggaggcaattaagaagcgcaataccaagctggcctctatcaacgca
gtggaaacacgcaaggctacagtacgagataatgaccaggatgtaggggactcctcagct
agacaggagagtggagaaggggatggggaggaggagagcatgattgtggacgatgtgggg
aatgagggagacgctgacgcctcggatgcgaaaaggagagagaatcaggaggaagaagtg
gattatgagagtgaggagggagaggatgctgagggagaggacctggtggaggaaaaagag
gagccggcagaggagaactctgaagaggtgcctgatgaggtgcccggtgacctggccact
gaagagcctggtggtgctggggcaaggaagaggtcgaagcagaaaagcacacacacccag
gacagcatgagggtcaacactgtgctggaaactagttccagcatcgaggactattcctat
gacagccagcagggtctctggtgtgaggttacgctcatcctgcctgtcagcaaggtgcac
tttgacctgacgtcgctggtggtggccgtggcccaaaatgcagtggtgatggagactaag
ggcatcaccagatgtctgctcagtgaggtcactaagaaagatggctccaaggagctggag
ctcaaaactgagggcatcaacatgcacgaactgtttaaccacagtgaaattcttgatgtg
aatcggctgtactccaatgaggtccacgccatggcaaacacgtacggcattgaggtggcc
ctgagagtcattgagaaggaaattaaagatgtcttcgctgtctacggtattgaggtggac
cccaggcatttatcattggtggcagactacatgtgttttgagggcgtgtacaaacctctc
aaccgcttcgccattcagtccaactcctctccactgcaacagatgaccttcgagacgagc
tacaagttcctgaagcaggccactatgttgggctcccatgataagttggtctctccctca
gcttgcttagtggtgggtaaggttgtaaaaggagggactgggatctttgatctgaagcag
ccattgcaataa
DBGET
integrated database retrieval system
