Oncorhynchus masou masou (cherry salmon): 135545812
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Entry
135545812 CDS
T10723
Name
(RefSeq) cleavage stimulation factor subunit 2-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135545812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135545812
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
135545812
U7-dependent histone pre-mRNA processing factors
135545812
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
DUF8400
Motif
Other DBs
NCBI-GeneID:
135545812
NCBI-ProteinID:
XP_064829789
LinkDB
All DBs
Position
9:29595307..29607041
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AA seq
596 aa
AA seq
DB search
MATLAAAAVVAAAGRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRE
TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIE
SPYGDNIMPDEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAFAL
LQAQVVMRIVDPEIALKMLHRQTPVQPLVPNSQAGPVPVANQPIPPANAPVSQSQPMPGM
HMNGAPQMMQPPPMGGGPGPMPGQGPVGPPGNLQHSPVGSSGQAAIERPQGPGGIPPRGL
LGDGPNDPRGGTLLSVTGEVIEPSRGGGFIGAPPPHQGPPMHMNQMAGGPPLDMRPPHDM
RGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGESRGPPMGEPRGMMGES
RGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMGEPRGMMGEPRGPPMMEQRGPPMME
PRGPPMENRGRDPRAVDPRGPVSGQRVPTAQGMQGPSPHSMNTNAPPPARPGPGVPQSGG
SFSPGQSQVTSQDHEKAALIMQVLQLTPEQIAMLPPEQRQSILVLKEQILKTTGAP
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggcgactttagcagctgctgctgttgttgctgccgctggcagagatcccgctgttgac
cgttcattgcgctctgtctttgtgggaaacattccatatgaggccacagaggagcaactg
aaagacattttttcagaagtcggtctcgttgtcagctttcggttggtgtatgatagggag
acaggcaagccgaagggatatggcttctgtgagtatcaggaccaggagacggccctcagt
gccatgcggaacctgaacggaagagagttcagcggccgggctctccgtgtcgacaatgct
gctagtgagaaaaacaaagaggagctcaagagtttggggacaggagcccccattattgag
tctccctacggggacaacatcatgccagacgaggctccagagtctattagcagagctgtg
gccagtttgcccccagagcagatgtttgagctcatgaaacagatgaagctgtgtgtgcaa
aacagtccccaggaggccaggaacatgctgttgcagaacccccagctggcctttgctttg
ctgcaggcccaggttgtcatgaggattgtagaccctgagattgccctgaaaatgcttcac
cgtcaaaccccagtgcagccattggttcccaacagtcaagctgggccagtgccagtggcc
aaccagcctattcccccagccaatgctccagtctcccagtcacagcccatgccgggcatg
cacatgaacggagctcctcagatgatgcagccccctcccatgggtgggggacctgggccc
atgccaggacagggaccagtgggaccaccaggaaacctccagcactcacccgtaggatca
tctgggcaggctgctatcgagcgacctcaaggaccaggtggtatccctcccagaggcctg
cttggcgatggccccaacgaccccagaggaggaaccctgctctctgtcacaggagaggtc
atcgaacccagtcgaggaggaggcttcatcggggcccccccaccacaccaggggcccccc
atgcacatgaaccagatggctggagggcctcctctggacatgaggccgccccatgacatg
agaggaccccccatgggtgaacccaggggcatgatgggagagccccggggaccccccatg
ggtgaacccaggggcatgatgggagagccccggggaccccccatgggtgaacccaggggc
atgatgggagagtcccggggaccccccatgggtgaacccaggggcatgatgggagagtcc
cggggaccccctatgggtgaacccaggggcatgatgggagagccccggggaccccccatg
ggtgaacccaggggcatgatgggagagccccggggaccccccatgggtgaacccaggggc
atgatgggagagccccggggaccccccatgatggaacagcggggaccccccatgatggag
cccaggggaccccccatggagaacagaggtcgggacccccgagcggtggacccccgtgga
ccagtgtcgggccagagggttcccactgcacaaggaatgcagggcccctcccctcactcc
atgaatactaatgcccctccacctgccagaccgggtcctggtgtaccacagtccggaggt
agcttcagtccagggcaaagccaggtgacatcacaggaccatgagaaggccgccttgatc
atgcaagtgctgcagctgaccccagaacaaatcgccatgctgcccccagaacagaggcag
agcattctcgtcctcaaagagcagatcctgaagaccaccggggcaccctga
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