Oncorhynchus masou masou (cherry salmon): 135545907
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Entry
135545907 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135545907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135545907
Enzymes [BR:
omm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
135545907
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
135545907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_16
TniB
AAA_18
AAA_22
MMR_HSR1
CbiA
Motif
Other DBs
NCBI-GeneID:
135545907
NCBI-ProteinID:
XP_064829954
LinkDB
All DBs
Position
9:complement(33969998..33974174)
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AA seq
443 aa
AA seq
DB search
MATEGPEKTGEEAAGAGAGGGGTRFDLEKETELRFEVEAGEKVQLELLTGLAEVFGSELN
RNKKYTFPPGSKIAVFTWQGCSVSLSGKTEVAYVSKDTPMLLYLNTHAALEQMRRQAERD
NERGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVELDVGQSGVSVPGTMSALCIER
PADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIINT
CGWVKGSGYQALVHCASAFEVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVERSK
DCRREARDDKIREYFYGFRGVSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDTQ
LKLVPVTPGRDLTHHVLSVSCADEGEEVAGGVRRGLLESPVCGFIVVTNVDTQAQVMTVL
SPAPRPLPRHTLLIMDIRFIDLK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgagggcccagagaagactggtgaggaggctgcaggggctggggctggtggg
ggagggacgaggttcgacctggagaaagagacagagctgcggttcgaggtggaggctggg
gagaaggtgcagctggagctgctcacgggattggccgaagtctttggttcggagctcaac
cgcaacaagaagtacacgttcccaccgggctccaagatcgctgtgttcacctggcagggc
tgcagtgtttctctctcaggcaagacagaggtggcgtacgtatcaaaggacacacccatg
ctgctctacctgaacacccacgccgcactggaacagatgagacgacaggcggagagagac
aacgaaaggggcccacgggtgatggtggtggggcctacagacgtggggaagtcgacggtg
tgcaggctgttgctgagctacgctgtcagactgggcaggaggccgacactggtggagctc
gacgtgggccagagtggggtgtcagtcccgggcacaatgtcagcgctgtgtattgagcgt
cccgctgacgtggaggaggggtactcagtacaggctccgctggtctaccactttggctcc
accacaccaggaaccaacatcaaactctacaacaagttgacatcatgtctggctgaggtg
ttttcccagcgctgtgaggtgaacaggaaagccagtgtgggcggctgcatcatcaacacc
tgtggatgggtaaagggttctggctaccaggccctggtccactgcgcctcagcctttgag
gtggatgtggttctggtgctggaccaggagaggctctacaacgagctgaagcgggacctg
ccgcatttcgtccgagtcgtgctgttacccaaatccggaggggttgtggagcgctccaaa
gactgccggcgcgaggctcgggacgacaagatccgggagtacttctacggtttccgcggt
gtctcgttctaccctcacgccttcgacgtgcgcttttctgacgtgcgcatctacaagatc
ggagcgccatccatcccggattcgtgccttcctctggggatgtcgcaggacgacacccag
ctgaagcttgtccctgtgaccccaggtcgtgatctcacgcaccacgtactgagcgtaagc
tgtgctgatgagggggaggaggtggcagggggggtgcgcaggggcttgctggagagcccg
gtgtgtgggttcattgtggtgactaacgtggacacacaggcacaggtgatgactgtgctc
tcgcccgccccaagacccctccccagacacacactgctcatcatggacattcgctttatc
gacctcaaatag
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