Oncorhynchus masou masou (cherry salmon): 135545918
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Entry
135545918 CDS
T10723
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03020
RNA polymerase
omm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135545918 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
135545918 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135545918 (polr2b)
03400 DNA repair and recombination proteins [BR:
omm03400
]
135545918 (polr2b)
Enzymes [BR:
omm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135545918 (polr2b)
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
135545918 (polr2b)
DNA repair and recombination proteins [BR:
omm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
135545918 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
135545918
NCBI-ProteinID:
XP_064829974
LinkDB
All DBs
Position
9:complement(34500078..34518848)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPSRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagatatccaatacgatgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgctggattgttatcagttcctattttgatgagaagggcctggtg
cgacagcagctggactcctttgacgagttcatccagatgtctgtgcagaggatcgtggag
gatgccccgcccattgacctgcaggctgaggcccagcacacctctggtgaggtggaggat
ccgccacgctacttgctgaagtttgagcagatctacctttcaaaacccactcattgggaa
agagatggagccccgtcgcctatgatgcccaacgaagccagactcaggaaccttacgtac
tctgctccactgtacgtggacatcaccaagaccatcatcaaggagggtgaggaccagctg
cagacccagcaccagaagaccttcatcggcaagatcccgatcatgctgcgctccacctac
tgcctgctcagcggcctgacagaccgtgatctgtgcgagctcaacgagtgcccactggac
cccgggggctacttcatcatcaatgggtcagagaaggtcctgatcgcccaggagaagatg
gccacgaacacagtgtacgtcttcgccaagaaggactcaaagtatgcgtacacaggggag
tgccgctcctgcctggaaaactcctcgcgccccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggtgaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcaggcaggaggtgcccatcatcatagtgttccgagccctgggctttgtgtcc
gacagagacatcctggagcacatcatctacgactttgacgaccctgagatgatggagatg
gtcaaaccatccctggacgaggcctttgtgatccaggagcagaacgtggcgctgaacttt
atcggctctcgtggtgccaagcccggtgtcaccaaggagaggaggattaagtacgccaaa
gaggtgctgcagaaggaggtgctcccccacgtcggagtcagtgacttctgtgagaccaag
aaggcctatttcttagggtacatggtccacagactcctattagcggccctgggcagaaga
gagctggacgacagggatcactatggcaacaagagactagacttggctgggccgctgttg
gctttcctgttccgtggaatgttcaagaacctgctgaaagagatccgcatctacgcccaa
aagttcattgaccgcgggaaggacttcaacctggagttggccatcaagacacgaatcatc
tccgacggcctgaagtactctctggccacggggaactggggtgacgtcaagaaggcccat
caggccagagctggagtgtcccaggtgctgaaccgcttgaccttcgcctccaccctctct
caccttcgtcgtgtgaactctcccatcggtagggacggcaagctagccaagccccggcag
cttcacaacacgctgtggggcatggtgtgccctgctgagaccccggagggtcatgctgta
ggcctagtgaagaacctggccctcatggcctacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcaccggcagcc
attgcggatgccacaaagatctttgtcaatggctgttgggtgggcatacacaaggaccca
gagcagctgatgaacacactgaggaaactgaggaggcagatggacatcattgtgtcggag
gtgtccatgatcagagacatccgagagagggagatccgcatctacacggacgccgggagg
atctgtcgtcctctgctgatcgtagagaagcaaaagctgctgctgaaaaggagacacatc
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggc
gtggtggagtacatcgacaccctggaggaggagactgtaatgctggccatgacccctgat
gacctccaggagaagggcgtggcttactgttctacatacagccactgtgagatccacccc
tccatgatcctgggagtctgtgcttccatcatccccttccccgatcacaaccagtctccc
agaaacacataccaatctgctatgggtaagcaagccatgggtgtgtacatcaccaacttc
catgtgcggatggacaccctggcccacgtgctctactacccccaaaaacccttagtcacc
acccgctctatggagtacctgcgtttcagagagctccctgcaggtatcaactcgattgtg
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgcg
gtggaccgtggattcttcaggtctgtgttctaccgctcctacaaagagcaggagtcaaag
aaaggcttcgatcaggaggaaatctttgaaaaaccctcacgcgaaacctgttcgggcatg
aggcatgccatttacgacaagctggacgacgacggcttgatagctcccggagtgcgtgtt
tccggcgaggacgtcatcatcggcaagacggtgaccctgccggagaacgacgatgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctccgcaccagcgag
acgggcatcgtggaccaagtcatggtcaccctcaaccaggagggctacaagttctgcaag
attagggttcgctctgttcgtatcccccagatcggtgacaagtttgccagtcgacacggg
cagaagggtacctgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attaccccagacatcatcatcaacccccacgccatcccctctcgtatgacagtcggccat
ttgattgagtgcctgcaaggcaaggtttcagccaacaaaggggagattggtgacgccacg
cctttcaacgatgcggtcaatgtgcagaaagtctccaacctgctgtctgaatacggatat
cacctgaggggcaacgaggtgttgtacaacggcttcaccggccgtaagattacctctcag
atcttcctcgggcccacatactaccagcgcctgaagcacatggtggacgataagatccac
tctcgggcccgaggcccagtccagatcctcaacagacagcccatggagggcagatcacgt
gacggaggtcttcgttttggggagatggagcgcgattgtcagatagcccacggcgcggct
cagttcctgcgtgagaggctgttcgaggcgtccgacccctaccaggtccacgtctgcaac
ctatgtggcctcatggccatcgccaacacccgcacgcacacctacgagtgcaggggctgt
cggaacaaaacacagatctccctggtcagaatgccgtacgcctgcaagctgctcttccag
gagctcatgtccatgagtatcgcccctcgtatgatgaccagttag
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integrated database retrieval system
