Oncorhynchus masou masou (cherry salmon): 135545933
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Entry
135545933 CDS
T10723
Name
(RefSeq) nuclear cap-binding protein subunit 1-like isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03015
mRNA surveillance pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135545933
09122 Translation
03013 Nucleocytoplasmic transport
135545933
03015 mRNA surveillance pathway
135545933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135545933
03041 Spliceosome [BR:
omm03041
]
135545933
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
135545933
Spliceosome [BR:
omm03041
]
Common components
Common spliceosomal components
Cap binding complex
135545933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_11
AAA_13
Vfa1
WIT1_2_N
DUF1281_C
GBP_C
RRF
EMC3_TMCO1
Afi1
FapA
tRNA_bind_2
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
135545933
NCBI-ProteinID:
XP_064830003
LinkDB
All DBs
Position
9:complement(35067750..35075023)
Genome browser
AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSSLPWV
GKELYEKKDVEIDRLLNQIDGYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTTCIDRLLNWFSHH
LSNFQFRWSWDDWTDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSALIPAD
PIFFYKYQDEANSALPGYAVAITVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKVLTDCDEGKLHILRVVYEVWRNHPQM
ISVLVDKLIRTQIVDCAAVANWLFSPNMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagacggcacagtgacggagatgatggaggccaatctcacaaaagaaggaga
acgtctgagcccattgagattgaggatcgcctggaatcactgatatgtcgagtgggagaa
aagagtacctcttccctggaaagcaatttggaaggtcttgcaggtgtcttggaagccgac
ctccccaattacaagaacaaaatcctccgcattttgtgtgctgtggctcgacttctaccc
gagaagctgacagtgtacacaacattagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgatccgacaactcaaagagaccttgaaggccaacctg
tacaccgaagcgctttacctagtgcgcttcctctgtgacctggtgaactgccacgtgatc
gctgccccctccatggtggccatgtttgagaactttgttagtgtcactcaggaggaagat
gtgccacaggttcgctcggactggtttgtctatgttgtactctccagtctcccctgggtt
gggaaggaactctatgagaagaaggacgtggagatagacaggctcctaaaccagattgac
ggttacctcaagaggcgactgaagactcatgtccccatgcttcaggtttggacagcagag
aagccacacccacaagaggagtacctggactgcctgtgggctcagatccagaagctgaag
aaggaccgctggcaggagcgccacatcctgcggccgtacattgcctttgacagcgtgctg
tgtgaggccctgcagcacaacctgccacccttcaccccgcctgcccacatgcccgactgc
cagtaccccatgccccgcgtcatcttccgcatgttcgactacaccgatgcccccgagggt
cccgtcatgccaggcagccactctgtggagaggtttgtgattgaggataaccttcacaac
atcatcaagtcccactggaaagagaggaagacctgtgctgcgcagttgctcagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccctgtcccccccacatcgacgtcatgtacaccacactgctcatcgagctctgc
aagctgcagccaggctccctgcctcaagttttggcccaagccacagagatgatgtacatg
agactggacactatgaacactacttgcatagaccgactcctcaactggttctcccaccat
ttgagcaactttcagttccgatggagctgggacgactggacggactgtttagcgctggat
gcagacaagcccaagcccaagtttgtaaaggaggttctggagaaatgcatgaggctctcc
tatcatcagcggatagtggacatcgtcccgcccactttctcagccctcatcccagccgac
cccatctttttttacaaataccaagatgaggccaacagtgcgctgccaggctatgccgtg
gccataacggtgggcaacgccatcaagaaccgggcctccaacgaggagatcctcaccgta
ctcaaagacgtgccaaaccccaaccaggaagatgacgatgatgagggtgagggcttcaac
cccctaaagatagaggtgttcctgcagacactcctccacctggctgccaagtccttcagc
cactccttcagtgccctggccaagttccatgagattctgaaggtcctgacggactgtgac
gagggcaagctgcacatcctccgggtggtctacgaggtctggcggaaccacccacaaatg
atctctgtgctggtggacaagttgatccgtacacagattgtggattgtgcagctgtagcc
aactggctcttctccccaaacatggctcatgaatttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggag
gaggccaaggataagctggagaggcaacagcataagaagcagaaggacagtggtgatgag
gaggacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatcgagcgt
ctgcaggagaaggtggagtcggcccagagtgagcagaagaacctcttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacgccctggtacaagaactgcatcgagaggctgcagcagatcttcctcatgcat
catgtgaccatccagcagtacatggggaccctggagaacctgctgttcaccgccgagctt
gaccaccacatcctagctgtttaccagcagttctgtgccctgcagctctga
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