Oncorhynchus masou masou (cherry salmon): 135545959
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Entry
135545959 CDS
T10723
Symbol
pcdh12
Name
(RefSeq) protocadherin-12
KO
K16499
protocadherin delta 2
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omm04515
]
135545959 (pcdh12)
Cell adhesion molecules [BR:
omm04515
]
Cadherins
Protocadherins
135545959 (pcdh12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Sde0182_C
TMEM154
DUF5527
Motif
Other DBs
NCBI-GeneID:
135545959
NCBI-ProteinID:
XP_064830039
LinkDB
All DBs
Position
9:complement(36681091..36703417)
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AA seq
1185 aa
AA seq
DB search
MLDRTVTSHTVMLLALLLVLWLISGAQSSDPAPLTVMYQVWEEQPVGTRVGRLVDDLRQR
GETGVLEDFQVVEHGQALPFSIGVRDGTVATLGQLDREELCRGSDLCELAFSVLYRKGGV
IHFLRVRVEVMDLNDHSPTFPSSQQEMEISEMATLRMRIPLDRAVDPDAGPNGLQTYSLS
VNQHFALDVRSAVDGPKQAELVVIKELDREVHSSFELTLVAWDKGNPPRSGSTLVQVNVL
DSNDNSPMFEDSTPTVELAEDTAWGTSVINLKATDPDQGANGEVEYFLSKHAPPEVQKLF
SIHPQSGVVTLKGPLDYEAKHFYEVDIQARDLGPNAIPSHCKLHIKLRDVNDNAPRIHVT
WTPPDSPVATVLEGAPNDTFLALVMVSDADSGDNGNVHAHIQHGSGHFRLKKIHGDNYMI
VTNGTLDREKVMEYNLTLLAQDYGDPPLSCVRHLVVHVLDENDNAPVFSKSHYRASFKEN
NTVGLQVLKVEANDVDIELSGRVSFSIRESNELGPPTASFAIHPTSGVVSAQQSLDYEES
PTYSFIVEAKDHGHPPLTSTATVLIEIQDVNDNYPVIKEPMPKKGIAFVSVPVNEEKGEI
VTQLGDGAEEGSTDPHTGHSVQNGFMGFLATTIKANDPDSGLNGRLSYMITDGNPTGLFR
LNDTTGQLYVNTTNATELIGKTFKVDIAVSDKGSPRLLTKATLEVAFINLRDHLKNSAPG
NHGQLSFTMMVAICLGASCILLLLAVALVTTFCRPTKRDNHSYNCRTAESTYTSHPRRPQ
KNIRKTDIQLVPVLRGRREDPPEDEAQPPSSMLLVVEEQNTETQYSVANSMNPTVHSQAN
PEGGSTLPVSHSRTLRKPGSIELDGTLPWTPAIPYRTLRKARNPSSSSSLYQTSTLRRHG
NSEIQVSPDVEVPETSSQVATLRRPKNTDTRSGLDAEDHRRMLRNLVRLSMAAFGENSIE
LSAASPEVQQVSQLLSLLHQGQLQPRPNFRGNKFSQRAGRSYAQDTDWQSTKDSGHGESE
AGDMDWDMGRDSPVDPLLEEGLNNLLNNPDDVFADIEDPAWMSRLSLPLTADYHENVFVP
NGPPSPETHCSPDTLDSASFSTFGKKPEDGLLGGALISEVNTLFNMLLTQKGDSQPRPSP
DVLYRLSATYRRSLGLEGDSAAAGGANIQRNSVNPEKRSPLAQCP
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgttggacaggacagtaacatctcacacagtcatgctgctggctctactgctggttctg
tggcttatttctggggcccagtcttcagacccggccccattaactgtcatgtaccaagtc
tgggaggagcagcctgtgggcaccagggttggccgtctggttgatgacctgcgtcagaga
ggcgagaccggggtactggaggatttccaggtcgtggagcatggtcaagccctgcctttc
tccattggagtaagagatggaactgtcgccaccctaggccagctggaccgggaggagctg
tgtcgaggctcggacctgtgtgagctggccttcagtgtcctctacaggaaaggtggtgtt
atccactttctgagggtgcgggtggaggtgatggacctaaatgaccacagcccaactttc
cccagcagccagcaggagatggaaatctctgagatggccacattgaggatgcggatcccc
ctggaccgagcggtggacccggacgccggccccaatggtctgcagacctactcgctgtcc
gtcaaccagcattttgccctggatgtaagaagcgctgtggatgggccaaagcaggcagag
ctggtggtgatcaaggagctggacagggaggtgcattcctccttcgagctgactctggtg
gcctgggacaaggggaatcctcccaggtcgggcagtactctggtccaggtcaacgtcttg
gactctaacgacaacagccccatgtttgaggatagcacccccactgtggaactagctgag
gatacagcttgggggactagcgtcatcaacctcaaggccacggaccctgaccaaggggcc
aacggggaggttgagtactttctaagcaagcatgcgccacctgaggtgcagaagcttttc
agtatccatccccagagtggggtagtgactttaaaaggcccactggactatgaagccaaa
cacttttatgaggtggacatccaggcgcgtgatctggggcccaacgccatcccctctcat
tgtaaactacacatcaagctaagggatgtcaatgataatgcaccaaggatccacgtcact
tggacaccccctgattccccggtggcaactgttttagaaggtgcaccaaatgacacgttc
cttgcactagtgatggtctctgatgcagactccggggacaacgggaatgtgcacgcccac
atccagcatggatccggccacttccgcctcaagaaaatccatggcgacaattacatgatc
gtaaccaatggcaccctggatcgggaaaaggtcatggaatataatctcacgttacttgcc
caggattacggtgaccctccactgtcatgtgttagacacctagttgtccatgtgttggat
gagaatgacaatgctcctgtattctccaagtcccattacagggcttccttcaaggagaac
aataccgtggggctccaggtcctcaaggtagaggccaatgatgtggatattgagctcagc
ggcagggtgtccttctccatccgagagtccaatgagctgggacctcccacggcgtctttc
gccatccaccccaccagtggtgtagtcagcgcccagcagtcattggactatgaggagtcg
cccacatactccttcattgtggaggccaaagaccatgggcatccacccctcaccagcacc
gccacggtactcatcgagatccaggatgtcaatgacaactaccccgtcatcaaggagccg
atgccaaagaaaggcatagcctttgtgagtgtcccggtcaacgaggagaagggggagata
gtgacacaactaggggatggtgctgaagaaggctccaccgatcctcataccggtcactct
gtccaaaatggatttatgggattcctggccactaccatcaaggctaatgatccagactct
ggcctgaatggaagactcagctacatgatcacagatggaaaccccacaggactattcagg
ctcaatgacaccaccggacaactgtatgttaacacgaccaatgctacagagctcattggg
aaaactttcaaagtggatattgctgtatcggacaagggttctccaaggctattgacaaag
gccaccttggaggtggctttcatcaacttgcgggaccatttgaagaactcagcccctggt
aaccatggtcagctgagtttcaccatgatggtggccatctgccttggggccagctgcatc
ctgcttctcctggcggttgccttggtgacgaccttctgtcgcccaacgaaacgagacaac
cattcctacaactgcaggacggccgagtccacctacacgagccaccctcgccgcccgcag
aaaaacatcaggaagacagacatccagctggtgccagtcctgaggggacgaagggaggac
cctccagaagatgaagcacagcccccctcctctatgctcctggtggttgaagagcaaaac
accgaaacgcagtacagtgttgccaactccatgaacccaacagtccactcccaggccaac
ccagaggggggatcaacgctgccagtctcccattccagaacactcaggaaacctgggagc
atcgagctggacggcactcttccttggacccctgccattccttaccgaaccctgcgtaag
gcaagaaacccttcatcgtcctcctcactgtatcagaccagtaccctgaggcgacatggg
aactctgagatccaggttagccccgacgttgaagtgccagaaacatcgtcccaggtggca
acacttagaaggcccaagaacacagataccagaagtggacttgacgctgaagaccacaga
cggatgctgaggaacctggtccgtctctccatggctgccttcggagagaactccattgag
ttgtctgctgcctctcccgaagtgcagcaggtttctcagctcctctccctgctccaccag
ggccagctgcagccaagaccaaacttccgaggcaacaagttctcccagcgtgctggcagg
tcttacgctcaggacactgattggcagagcaccaaggacagcggtcatggtgagagtgag
gccggagacatggactgggacatgggccgagactcccccgtcgacccgctactggaggag
gggcttaataacctgctcaacaaccctgatgacgtctttgctgacatagaggaccctgca
tggatgtcccgcctctccctccccctaacggccgactaccacgagaatgtttttgttccc
aatggaccaccgtcccctgaaacccattgctccccagacacccttgactctgcctccttc
tccaccttcggtaagaagccggaggatggcttactgggcggggccttgatctcagaggtc
aacactttgtttaatatgctcctgacccagaaaggcgactcccagccccgcccctcgcca
gacgtgctctacagactgtccgccacctaccggcgctcgctggggctggaaggagatagc
gccgcagcagggggcgccaacatacaaaggaactctgtgaaccccgaaaagaggtccccc
ctggctcaatgcccttag
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