Oncorhynchus masou masou (cherry salmon): 135546061
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Entry
135546061 CDS
T10723
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04270
Vascular smooth muscle contraction
omm04625
C-type lectin receptor signaling pathway
omm04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
135546061
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
135546061
09153 Circulatory system
04270 Vascular smooth muscle contraction
135546061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135546061
Membrane trafficking [BR:
omm04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
135546061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
NTS
Pept_S41_N_bact
PH
Motif
Other DBs
NCBI-GeneID:
135546061
NCBI-ProteinID:
XP_064830243
LinkDB
All DBs
Position
9:46825095..46894927
Genome browser
AA seq
1467 aa
AA seq
DB search
MSDTQSSITDRFPNKENRSSSILSKDHPPDKKPKSDKPSVSASHEFDPTDVLVQKSDCVL
AEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLLEGEAKVVFLGAQTGSPSVTSP
NSPGQPMGERPYSPHDRITSPLPIWEENNSVHNQKVHILQKMLSKEQEDLQAMKEEYSRN
PTPKLLKDIQEAKKHIPQLQGQLSKATGGAQDALRLGDGDDGSMEDMDHTPSSSSNELSW
SSSMMSPVLRGFASASPESLCQRDLLSYHSPKSTPRDSFNSCHSPDPEDTPDLDSLSPST
VSSPSSRFVSQIIGAEDDYFDSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQFDP
APLLCYLYADLCKQTNSKETRRVFMDFHNFFIDRGANLKVAVPESLSSDLDRRRTELIPE
ELNRQYVQMVQDTQLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERERAC
AENIITKIEDVLLTTQSTEEEKCTTMQYVILTYMKHLGVKVKEPRGLESKWVRINFLPKI
KKSIKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSVGKAMDLNKPRPQKQLSQPCLEH
LEAGRLRGSQSSEGSELIHSSPTNATSPTNSTTNNNASDGGSRDSEFVGTPNSAFPKLSE
GLGDLDSLEYTPNTHFDYSLSPYSLDQLQEEDRESGILEGTPKAIRRLDGLGSTEVQSED
DQGGTDSEHDPLNWQQLVGREVLAGLQPHEIKRQEVINELFYTERAHLRMLKVLDNIFYQ
KLTREGILPPADIKNIFTNLEDIVQLHVWISEQMVTIRKRNETSVIDQIGDDLLSWFSRG
EEEKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPVEMQ
RLTKYPLLLENIAKYTDDTVEKDKVKKAGDCCRKILNHVNQAVKESENKQRLEDYQRRLD
LSSLKQTENPMISELKNLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDE
RLILKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYELMAQ
TVSEQRMWQRQITQRADAMKVKPNSVIPLPQTDGERDGVEIITAGIAQLSKDPDRISSGS
SQSIDKEGCAASGGEMQTSLPDANPFEGLKPEEEEPNREEGLYGDPDLADRLPFRMAVDG
LSESDSVGFSPSRADDALKTLSALKQVLVTQLMSQEDGEGAGRSSSGGGRLLRTTSLRTP
VDSRARVAVQNGSGRCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESST
DDDLQATGKQLSASRGCGAGDSGISLRFSSASQAGSISSFSRQVLSHIRNLQTNLNHLKE
VEAKYHSLLRQRLARSSTDMDDNKDKR
NT seq
4404 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggtttcccaataaagaaaacagaagcagt
agcattctcagtaaagaccacccccctgacaagaaacccaaaagtgataaaccgtcagtc
tccgcttcacatgagtttgaccctacagacgttctggtgcagaagagtgactgtgttcta
gcggagggaaagcctgagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaaccccgtgtttgtgcagcttgtcaaa
gaggatggtgctgcagagcgtgcgggtgtacagacaggtgacaggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtagtaaagctcataaaatcgggctcc
tatgtggccctcacagtgttggggcgaccccctgggttgccccagatcccccttttggag
ggcgaggctaaggtggtgttcctgggggcccagacagggtcgccctctgtcacctctcca
aactcccctggacagccaatgggggagcgaccatacagcccccatgaccgcatcacctct
cctctaccgatatgggaagagaacaacagcgtacacaaccaaaaggtgcacattctgcag
aagatgttgtccaaagagcaagaagatttgcaggcaatgaaggaggagtacagcaggaat
ccgacgcccaaactactgaaggacatccaggaagccaagaagcacattccacagctgcag
gggcagcttagtaaagccactgggggagcacaggatgccttgcgattgggtgatggagat
gatggaagcatggaagacatggaccacacaccttcctccagtagcaatgaactctcatgg
agcagcagtatgatgtcccctgttctccgtggttttgcatctgcctccccggagagcctg
tgccaaagagacttgttgtcctaccacagcccaaagagcacgccccgagacagcttcaac
tcctgccactcccccgacccagaagacactccagacctggactccctgtccccctccact
gttagcagcccctcctcacgcttcgtctcccagatcatcggagctgaggacgactacttt
gactctgatcaggagcaggtcaatggccagtgcagctgtttccagagcatggagctgctc
aagtccagacctgcccaccttgcagcgttcctgcatcacgtcgtctcccagtttgaccct
gcaccgctgctctgctacctctacgctgacctgtgcaagcagaccaactccaaagaaacc
agacgggtgttcatggacttccacaacttcttcatcgaccggggcgctaatttaaaagta
gctgttcccgagtccctatcctctgaccttgaccggaggaggacggagctgatccctgag
gagctgaacagacagtacgtccagatggtgcaggacacccagctccctgacatccagagg
aacctggaggactttaggcagaagcgcagtatgggcctaaccctggcggagggggagctg
gcccggctggacaccgagcgcgtcagagaccgggtagcactggagagagaacgtgcttgt
gctgaaaacatcatcaccaagatagaggatgttctgttgacaactcaatccacagaggag
gagaaatgcactactatgcagtatgtcatcctcacgtacatgaagcaccttggcgtgaaa
gtcaaagagccacgcggcctagagtccaaatgggtccgtatcaacttcctccccaagatc
aagaagagtatcaagaccgagaaggagggaggggaggagaaggtgaaacgcaccaggttt
cccagcatcctcgggcctcctcgccggcccagccgcgtcgaccccacgtccgttggcaag
gccatggacctcaacaagccacggccccagaagcagctgtcccagccctgcctggagcac
ctggaggcgggtcgcttgagggggagtcagtccagcgagggctcagagctcatacattcc
tccccgaccaacgccacctcgccaaccaacagcaccaccaacaacaacgcctctgacgga
ggcagcagagactctgagtttgttgggacccctaactctgccttccccaaactgagcgag
ggtcttggagacctggacagtctagagtacactccaaacacacattttgactacagcctg
agcccctatagcctggaccaactacaagaggaggacagggagagtggaattcttgaagga
acacccaaggctatcagaaggttggatggccttggttctacagaggtgcagagtgaagac
gaccaaggaggcactgactccgagcacgaccccctcaactggcagcagctggtgggacga
gaggtcctggccggactccagccccacgagatcaagagacaggaagtcattaacgagctg
ttctacactgagagggcccacctgcggatgctcaaagtgctggacaacatcttctaccag
aagctcaccagagagggcatactgcctcctgccgacatcaagaacatcttcaccaacctg
gaggacattgttcaactgcatgtttggatatctgagcaaatggtaacaattcggaaaagg
aatgagacgtccgtaatcgaccaaataggagacgacttgctgtcctggttcagcaggggc
gaggaggagaagatcaagcaggcggtgggcacattctgcagcaaccagcccttcgctctg
gagctcatcaagagcaggcagaagaaggactcacgcttcacctccttcatgcaggaggct
gagagtaaccgactgtgtcgaagactccaactgaaggacatcattcccgtggagatgcag
aggctcaccaagtaccctcttctactggagaacatcgccaagtacacagatgacaccgtg
gagaaagataaggtaaagaaggcgggcgactgctgcaggaagatcctcaatcacgtcaac
caagcggtgaaggagtctgaaaacaagcagaggctggaggactaccagaggcggttagac
ctctcgtctctgaagcagacagagaaccccatgatttcagagctcaagaacctggacctg
accaagaagaagatggtccatgagggaccactgtcatggaaggtcaacaaggacaagact
attgagctgtacaccctgctcctggaggacatcctggtgctgctgcagaagcaggacgag
cggctcattctcaagtgccatagcaaaaacctgtctggcaccgccgacaccaagcacatc
ttcagccccatcatcaagctcaacgcggtgctggtgcgctctgtggccacagacaacaag
tcgttctttgttctctcaatgtcggacaacggggcccaaatctacgagctgatggcccag
accgtatcagagcagagaatgtggcagcggcagatcacccagagagcggacgccatgaaa
gtgaagccgaacagcgtcatccccttacctcaaacggatggagagagagacggtgtggag
atcatcactgcaggcatagcccaactcagtaaggacccggaccgcatctcctctggaagc
agccagtctatagataaagagggctgcgctgcctctggaggcgagatgcagacctctctc
ccagatgccaacccatttgaaggactcaagccggaagaggaggagcccaaccgggaggag
gggctttacggggacccggaccttgcagataggctgcccttccgcatggccgtagacggg
ctcagcgaatcggacagtgtgggcttcagtccttcgagagctgacgatgccttaaagaca
ttgtcagcgctgaagcaggtccttgtgacccagctcatgtcacaggaggacggtgaaggc
gccgggcgctcctcctcggggggcgggcgtcttctcaggaccacgtccctgaggaccccc
gtggacagccgggcccgggtggcggttcagaacggctcagggaggtgcacccaggcaagc
caccctgaggacccggctcaggacctggtgtctggggacacgggcttctttgagtccccc
gaggattatgcagggtacttggtcttggagggctacgggggctcgggggagagcagcacg
gacgacgacctccaggccacgggaaagcagctgagcgcctcgcggggctgcggggcagga
gactctgggatcagcctaagattctcctctgcctcacaggcaggcagcatctccagcttc
agccgacaggttctgtcccacatccgaaacctgcagaccaacctcaaccacctcaaggag
gtagaggccaagtatcacagtctactacgccaaaggctggccaggtcatcgacagacatg
gatgataacaaagataagagatag
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