Oncorhynchus masou masou (cherry salmon): 135546253
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Entry
135546253 CDS
T10723
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04137
Mitophagy - animal
omm04140
Autophagy - animal
omm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135546253
04137 Mitophagy - animal
135546253
04148 Efferocytosis
135546253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135546253
Transcription factors [BR:
omm03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
135546253
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Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
135546253
NCBI-ProteinID:
XP_064830596
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All DBs
Position
9:55454953..55472101
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AA seq
628 aa
AA seq
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MDTKEEPVAQRSDQRKVRSRDAARCRRSQETELFYELAHTLPLPRRVSADLDKAAIMRVT
LSFLRMHHLRSAGDTSEERVTDGDEDTMDGFYPRALAGFIMVMTEEGDMIYLGDSVDKHL
GIQQLELLGQSVYDFVHPCDQEELRDLLAPRPGVFKKKPVQQHTEMTFFLRMKSTLTVRG
RTVNIKSATWKVLHCTGHMRVCSSDEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTFLT
RHSMDLRFTHCEGRVAELVGYEPEDLIGKSAYEFHHALDTDHVTKSLHILLSKGQVCTSQ
YRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLKSD
PVSEASEETLCDSDNSSSGELFQQLKENPEDLLQLAPVSGDPIVPLTDFAELSFSLPSSP
DSAPVFPQDLCTPELWTLLSPIFDKPTSSSPTPALIPIEELPIEDEVEKLFAVCSEEVVQ
KEDQPEDVEVVDLDMLAPYISMDDDFLLSVQLPGIPDSPSPEPPTATRKRSHEQDEDMQS
QLMSQDKRPRHSVSPIEHELLLSYTLLDCLEDTESPELELGPHPHRRSQLLTDRDPILGE
AQGRCDTAALMRDLFLSRPPDTLTSSLT
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaggaagagcctgttgcacaacggtcagatcagcggaaggtgcgttcccgg
gatgcggcacgctgccggcggagccaggagacggagctgttctacgagctggcccacacc
ctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagggtgacg
ctcagcttccttcgcatgcaccacctccgctcagcaggggacacgagtgaggagcgcgtc
acagatggggacgaggacacgatggatgggttctacccccgggcgctggcaggtttcatc
atggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcgacaaacacctg
ggcatccaacagctggagctgctgggccagagtgtgtatgactttgtccacccatgtgac
caagaggagctacgggatctcctggcgcctaggccaggtgtattcaagaagaaaccagtg
cagcaacacacagagatgaccttctttcttaggatgaagagcactctgactgttagaggg
cgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccacatgcgt
gtgtgctccagtgacgaggactcgtcgccccctgcaggcagcttcatgacggtgctgtgt
gagcccatcccccacccgtctagtgtggagttccctctggaccgcagtaccttcctcact
cgacacagcatggacctgcgcttcacacactgcgagggcagggtggcagagctagtggga
tacgagccagaagatctgattggcaaatctgcctacgaattccatcatgccctggacacg
gatcatgtgaccaagagcctgcacatccttctatctaaaggccaggtgtgcaccagccaa
taccgttttctggctaagagtgggggcttcgtgtgggcagagacccaggctacagtcatc
tacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctcagtgtg
gtggagcaggcagatgtggtgttctcagtagagcagactggctgtgggctgaagagtgat
cctgtctctgaggcctcagaggagactttgtgtgacagtgacaacagcagcagtggagag
ctcttccaacagctgaaggagaacccagaggacctcctccaactggcccctgtctccgga
gaccccatcgtacccctcacagactttgcggagctgtcgttcagccttccatcaagccct
gactccgccccagttttcccacaggacctgtgcacccccgagctgtggacgctcctctca
cccatattcgacaagcccacctcatcatcaccaacaccagcactgatccccattgaggag
ctgccaatagaggatgaggtggagaagttgtttgccgtctgttcagaagaggtcgtgcag
aaggaagaccagcctgaggacgtggaagtggttgatctggacatgctggcaccgtatatc
tccatggatgatgatttcctgctcagcgtccagctccctgggatccctgacagcccctcc
ccagagccccccactgctaccaggaaacggagccatgagcaggatgaagacatgcaatct
cagctgatgagtcaggacaagagaccgagacactctgtgtcccccatcgagcacgaactg
cttctcagctacaccctactggactgcctggaggatacagagagcccagagttggagctg
gggccacacccccacaggcggagtcaactgctgacggacagagaccccatcctcggggaa
gcccagggacgatgtgacaccgcagccttgatgagggacctcttcttgtcccgcccacct
gacaccctgacctcctctctgacttga
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