Oncorhynchus masou masou (cherry salmon): 135546383
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Entry
135546383 CDS
T10723
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
135546383 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135546383 (scarf1)
Membrane trafficking [BR:
omm04131
]
Endocytosis
Phagocytosis
Scavenger receptors
135546383 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
135546383
NCBI-ProteinID:
XP_064830833
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All DBs
Position
9:61176310..61185593
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AA seq
962 aa
AA seq
DB search
MGLFLTGLGLLLCCSLSSPQRLAPSERNVCQDLRDPSTLVCCTGWRQQGEECTIPVCDGE
RACQQDEVCVYPGVCRCRPGYYGAHCKTRCPPEFWAPDCREMCKCHPHGRCDPITGECTC
LPNRWGPLCQNACRCGRHGHCHPVHGNCTCDEGWWTPTCTKQCQCYPGTSTCDPLTGRCQ
CASGYWGQKCSLRCSCYSSSCQQKTGACECQNRWWGPSCDRPCNCDLKHSECHAVSGECL
CQPGYKGVVCNEPCGPGEYGSGCTLSCGHCKRGQSCSVVDGVCTACEPGWNGTRCDQPCK
RGYHGNDCHEACPRCRNGEPCNPRTGACSRCDPGWTGPRCDKPCFNRTFGDACRFLCSPC
FHGHCDHVTGSCVCGPGFQGQSCNITCPDQLYGFNCSSVCDCGEGTACHPETGACPYSGH
RALIAGLLVPLILVLLGLVCCCCCCGGPTDGKDRVAVGDGGTSVRMKHHVYNVLANVSSA
VPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTDGSSFDSDEETGEALYCVPPR
EDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSVSAEDMSLPFGIPRTSSNAKSKRPSVSF
AEGTRFSPKERRGSAQDLTPGAPRTKPKSPWGVLMLSALQAHGGKASEGEETETGEGGVD
GCEGGTGPLEEPGSSGEEGDPDVDRYTATPSQAMSTLQVPGALVGRRRTISNAAVNRKGG
QAPGSTSNGQQAEIDKGMDKVTTVYVTVGKAGLGRPLSKLELPSSEGPVQAMLRRLGSLQ
RHKDQEGGTRSKGKILRAEGITKPPRRKLGARASVWEQGGHPPLGVECPVGEGVPMRKPS
RRKQHAHHSSPAVMGNTDDGTNTHPPPEGANATIMPTRPLSSILKSVPEVAGLEVMGERS
AVRGENGDPGMQTETDSGYLTVGPAGVVTNAVSLSEVIANDGVVASVDDGANLYENVMIM
HS
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgtttctgacgggtctaggattactgctctgctgttccctctcctcccctcag
agactggctccctcagagagaaatgtctgccaggacctcagggatccctccactcttgtc
tgttgtactggatggaggcaacagggagaggagtgtactatacctgtgtgtgatggcgag
cgggcctgccagcaggatgaggtgtgtgtatacccgggcgtctgtcgctgtcgtcctggc
tactatggagcccactgcaagacacgctgccctccagagttctgggcaccggactgccgt
gagatgtgcaagtgccaccctcacgggcgctgtgacccgatcacgggcgagtgcacatgc
ctccccaaccgctgggggccactctgtcagaacgcctgcagatgtggccgccacgggcac
tgtcaccctgtgcacggcaactgcacctgcgacgagggctggtggacgcccacctgtacc
aagcagtgccagtgctacccaggcacctccacctgtgacccactgaccggcagatgtcag
tgtgcctcagggtactggggtcagaagtgcagccttcgctgtagctgctacagctcgtcg
tgccaacagaagacgggggcgtgcgagtgccagaacaggtggtggggtccgtcgtgtgat
cgcccctgtaactgtgacctgaagcacagcgagtgtcatgcggtcagcggggagtgttta
tgtcagcctgggtacaagggagtcgtctgtaatgagccgtgtggacctggggagtatggc
agcgggtgtacactgagctgtggccactgtaaacgaggccagtcgtgctctgtggttgac
ggtgtctgtacggcctgtgagcctgggtggaacggcacacgctgtgaccagccgtgcaag
cggggttaccatggaaatgactgccatgaggcctgcccacgctgcaggaacggtgaacca
tgcaaccccaggacgggggcgtgttcacgatgtgatccaggatggaccggacccagatgt
gacaagccatgctttaacagaacatttggggacgcctgccgcttcctgtgcagcccctgt
ttccatggccactgtgatcacgtgacaggaagttgtgtctgtgggcccgggttccaggga
cagagttgtaatatcacctgtccagaccagctgtatggctttaactgttcctctgtctgt
gactgtggagagggcaccgcctgtcacccagaaacgggggcgtgtccatacagtggtcac
agggctctgatcgctggtctcctggtccctctgatcttggtgctcctgggtctggtctgc
tgctgctgctgctgtggaggacctactgacggcaaagacagggtagcagtgggtgacggt
ggtacctctgtccgtatgaagcatcatgtgtataacgtcctggccaacgtgagctctgct
gtaccctgtatctctgtctggtcctctgggctacccagagtcacagtgtcccaccacgac
cctgagctgacattcaaccacagtttcatagagcctccctcctcaggctgggtgacggac
ggatcctccttcgacagtgatgaggagaccggagaggctctctactgtgtcccccccaga
gaagacatccctgcagtggcgggcggtgagttccaggagttccagcatgagatgagttct
aagtgtaacatgttccccgacccctctgccttcagcgttagtgcagaagacatgtccctc
ccctttggcatcccccgcacctccagcaacgccaagtccaaacgcccctccgtctccttc
gccgaaggcaccaggttcagccccaaggagcgccgaggctctgcccaggacctgactccc
ggggccccccgtaccaaacctaagtccccctggggggtcctgatgctgtcagccctccag
gcccatggagggaaggcctcagagggggaagagacggagacaggtgaggggggtgtggat
ggatgtgaaggtgggactggaccattggaagaaccaggatccagtggtgaagaaggggac
cccgatgtggacaggtacacggccaccccgtcccaagccatgtctaccctgcaggtgcct
ggagcattggtaggaagaagacgcaccatatccaacgctgctgttaacagaaagggtggg
caagcaccagggtccacatccaatggccagcaggcagagatcgataaagggatggacaag
gtgaccacagtgtacgtgacagtgggtaaggcggggttggggagacccctgtctaaacta
gagctccccagctcggagggcccagtacaggccatgctacgcaggctaggcagcctccag
agacataaagaccaggaggggggaactaggtccaagggtaagatcctgcgggcggagggg
atcaccaagccacccaggaggaagctaggtgccagggccagtgtgtgggagcagggtggt
cacccacccttgggggtggagtgtcctgtaggggaaggtgtacctatgaggaaacccagt
aggaggaaacagcacgcccaccacagctcgcctgctgtcatgggaaacactgacgatggc
actaacactcaccccccaccagagggtgccaatgccaccattatgcctacgaggcccctg
tcctccattttgaaaagtgtgccagaggtcgctgggttagaagtcatgggtgaaaggtca
gcggtgaggggagagaatggtgaccctgggatgcagactgagactgacagtggatatcta
acagttgggccagctggagttgtaaccaacgctgttagtctgagtgaagtcatcgccaat
gacggagtggtggccagtgtggacgatggagctaacctatatgagaatgtgatgataatg
cattcctaa
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