Oncorhynchus masou masou (cherry salmon): 135546438
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Entry
135546438 CDS
T10723
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135546438
03036 Chromosome and associated proteins [BR:
omm03036
]
135546438
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
135546438
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
135546438
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
Spt6_S1
SPT6_acidic
HHH_3
S1
S1_RRP5
HHH_9
SH2
Tex_N
Tex_YqgF
oligo_HPY
Motif
Other DBs
NCBI-GeneID:
135546438
NCBI-ProteinID:
XP_064830932
LinkDB
All DBs
Position
9:63140320..63170786
Genome browser
AA seq
1729 aa
AA seq
DB search
MDFIESEAEESEEEFGSTAYEEEEQENTEDQDEDGNLSGLIDDGVDEGEGEEEEEKEGKK
DKEGDSDSGEDIGHHKRKRSFDDRLDDDDIDLIEENLGVKVKRQKFRRLRDMSDDEDEEG
DDDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEQEDDEESDIDDFIVDDDGQPL
KKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEDADEESWDRPKKQTK
KRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTCVKPAEDDELEQEAEWI
YRNAFSTLTISMQENADYLDRGPATTFSRKGPSTIQKIKEALNFMRNQHFEVPFIAFYRK
EYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFEQISADPDKPLADGIR
PLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSKKKLKKIKEVDEDGNE
QEVVEEEEEEEEEHPKGPDLKLASRRDMYSICQGAGLDGLAKKFGLTPEQFGENLRDSYQ
RHETEQFPAEPMELAKDYICSQFSTAEAVLEGTRYMVAMQIAREPLVRHVLRQTFQERAK
INIKPTKKGKKDVDEAHYGFSFKYLKNKPVKELNGDQFLKMLQAEEEGLLTINVCIDLIG
VKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLYPQMAKELKNKLIA
EAKENIIKACSRKLYNWLKVAPYRPDQQVEEEEDEELMSEAQGKGIRVLGVAFSSSRDTP
VFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLNSKKPHIIAIAGE
NRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEADFRDYPPLLRQA
VSVARKIQDPLVEYAQVCSSDDDILCLKLHPLQEHVVKEDLLNALYCEFINRVNEVGVDV
NRAMAHPYTQSLLQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMCHMGPKVFINCAG
FIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEIL
ENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTYRGPNTEEIFNLL
TKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVW
NHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKIDIE
KLSVDLTCRTSDLSDKNNDWKLPKDTYYDFDTETEDVKQEEEAKKKQQRTTYIKRVIAHP
SFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADSIYQHIDVREEGKENAFS
LGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRKKMEEVLVKSKKE
KPTFIPYYVSACRELPGKFLLGYQPRAKPRVEFVTVTPEGFRYRGQIFPTVNGLFRWFKD
HFQDPVAGITPSSSSRTRTPASVNATPANINIADLTRAVNALPQNMTSQMFSAIAAVTGQ
GQNPNTTPAGWASSQYGYTGDSSGGGGSSSAYHVFATPAQQPIATPLLTPSYSYTTPTPS
QQQTITTPQYPSSTPQSSHGSQGHGHRPSSSTPTSSSSSRHHRTPTPKATSHTAVDWGKM
AEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMDR
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagcgaagcagaggagtctgaggaggaatttgggagtacagcatat
gaggaggaggaacaggagaataccgaggaccaagatgaggatggaaacctcagtggtctg
attgatgatggtgtggatgaaggggaaggagaggaagaggaggagaaggaagggaagaaa
gataaggaaggagatagtgactctggggaggacattggacaccataagaggaagagaagc
tttgacgaccgcttggatgatgatgatattgatctcattgaggagaatttgggagtgaaa
gtgaaaaggcaaaagttccgtcgtttgcgagacatgtcggacgatgaggatgaggaggga
gatgatgacgtcagggaggcccatgagaaggacatgatagcagatgagatcttcatgggg
acgggagcggatgagggcgaggcattggatgtgcctttgcatcccggggaggatgagcag
gaggacgatgaagagtctgatatcgatgactttattgtggatgatgacggacagcccttg
aagaaacccaagtggaggaagaagctgccaggatatacagatgcagcacttcaggaggcc
caggagatattcggaggggactttgactttgccgagtttgacactgaagcctatgaagat
gcagaggaggaggaggatgcagatgaagagtcatgggaccggcccaagaagcagaccaag
aagagggtgggccgacgcagtatctttgagatctatgagcccagtgagctggagagcagt
cacatgacggaccaggacaatgagatccgttccactgacatgccagagaggttccagttg
cgctccacttgtgtgaagcctgcagaggatgatgagttggaacaggaggctgagtggatc
tataggaatgccttctctactctcaccatctccatgcaggagaacgcagactatttggac
agaggtccagccactacattcagcagaaaaggccccagcaccatccagaagattaaagag
gctttgaatttcatgagaaaccaacactttgaggttccgttcatagcgttctacaggaaa
gagtatgtggaacctgaactcaatatcaatgatctgtggaaagtttggcagtgggatgag
aagtggacccagctgaaaacccgcaaacagaacctgagacgcctgttccagaagatgcag
ggataccagtttgaacagatctcagcagaccccgataagccactggctgatggcattcga
ccattagacacttcagatttagagcggttgaaggatgtccagtctagtgatgaactgggc
gacgtctacaaccatttcctgctgtactatggccgggatatcccaaagatgcagaatgca
gccaggtccagcaagaaaaagctgaagaagatcaaagaagtagatgaagatggtaatgag
caggaagtagtagaggaggaggaagaggaagaagaggagcacccgaaggggccggacctg
aagcttgcatctcgcagggatatgtacagcatctgccagggtgcaggactggatggccta
gccaagaagtttggtctgactccagagcagtttggagagaacctacgtgacagttaccag
cgtcacgagacggagcagtttcctgctgagccaatggagctggctaaggactacatctgc
agccagttcagcacagcggaggcagtactggaggggactcgctacatggtcgccatgcag
atcgctcgggagcctctagtcagacatgtgctccgacagacattccaggagagagccaag
atcaacatcaaacccaccaagaagggaaagaaggatgtggatgaggcccattatggcttc
tcctttaaatacctgaaaaacaagcctgtaaaggagctgaatggagaccagttcctcaag
atgttgcaggcagaggaagagggcctgctcaccattaacgtctgtattgacctgattgga
gtgaaggggtacggaggtgaccaggcatactatgaagagataaagcagttttactacaga
gatgagttcagccaccaggttcaggagtggaacagacagcgcactctggccattgaacga
tccctcaaacagttcctttacccgcagatggcgaaagagctgaagaacaaacttattgca
gaagcaaaggagaacatcatcaaggcctgcagcaggaagctgtataactggctgaaggtg
gcgccctatcggcccgaccaacaagtggaggaggaggaggacgaggagctcatgtctgag
gcccagggcaaagggatccgcgtgctgggagtggccttctcatccagcagagacacccca
gtgttctgcgccctggtgaatggtgacggagaagtgggggatttcctcaggcttccttac
ttcctgaagaggaggaacgcatggagggaggatgaaagggagaaaaagatccacgatatt
gaaaccctgaagaagtttctgaacagcaagaagcctcacatcatcgctatagctggggag
aacagggatgcccagatggtgattgaggacataaaacgcactgccagtgagctggagcag
gagtcctctttccccaccattggggtggagctggttgacaatgagctggccatgctctac
atgaacagcaagaagtcagaggcagatttccgggactacccccctctcctgagacaggct
gtgtccgtggccaggaagatccaggaccccctggtggagtatgctcaggtgtgcagcagt
gacgatgacatcctctgcctcaagttgcaccctttgcaggagcatgtagtgaaggaggac
ctgctgaatgctctgtactgtgagttcatcaaccgggtgaatgaagtgggtgtggatgtg
aaccgggccatggcccacccctacacccagagcctgttgcagtacgtctgtggcctgggg
cccaggaagggatcccacctgctcaggatcctgaagcaaaataacactcgtctggagaac
cgcactcagctggtcaccatgtgtcacatgggccccaaggtcttcatcaactgtgctggt
ttcataaagattgacacagcttctctgggagatagtactgactcctatattgaggttctg
gacgggtcacgggtgcacccagagacctatgagtgggccaggaagatggccgtggacgct
ctggagtatgatgagtcagcggaggacgccaacccggctggagcactggaggagatcctg
gaaaacccagagcggctcaaagacctggacttggatgccttcgctgaggagctggaaaga
cagggttatggtaacaagggcatcaccctgtatgacatccgtgctgagctgagctgcagg
tacaaagacctgaggtccacctacagaggacctaacacagaggagatcttcaacctgctc
accaaggagacaccagagaccttctacatcggtaaacttattaccagtgtggtgacagga
attgctcaccggcgcccccagggggagagttatgaccaggccataaggaatgatgagaca
ggtctgtggcagtgtcctttctgtcagcaggacaactttcctgagctcagtgaggtgtgg
aatcattttgacagtggctcctgccctggccaagctattggggtccgctgtcgcatggac
aacggagtcaccggctttatcccaaccaagttcctcagtgacaaagtggtcaagcaccct
gaagaaagggttaaggtgggcatgacagtgcactgcaggatcatgaagattgacattgag
aagctcagtgtggatctaacctgtcggacgtcagatttgtcggataagaacaacgactgg
aagcttcccaaggacacctactacgactttgacactgagacagaggatgtgaagcaggaa
gaggaggccaagaagaaacagcagagaacaacctacattaagagggtgatagcccaccca
tcgttccataacatcaacttcaagcaggcagagaagatgatggagtccatggaccaggga
gatgtgatcatcaggcccagtagtaagggagagaaccacctgactgttacttggaaggtt
gctgatagcatctaccagcacattgacgtacgagaggagggcaaggagaatgccttcagc
ctgggacataccctgtggatcaacactgaggaatttgaagatctggatgaaatcacagcc
agatacgttcaaccaatggctgcgtttgctcgcgatctgctcggtcacaagtattttcaa
gaatgcaatggtggagaccgaaagaaaatggaggaggtcttggtgaaaagcaagaaggag
aagcctacattcatcccctactatgtgtctgcctgtagagagctgccagggaagtttctg
ctcggttaccagccccgcgcaaagccaagggttgagtttgtgactgtcacacctgagggg
ttcagatacagaggacagatttttcccacagtcaatggacttttccgatggttcaaagac
catttccaggatccagtggcagggattactcccagcagcagcagtagaacacgaacccca
gcctctgtcaatgccacgccagccaatattaacattgcagatctgactcgtgcagtgaac
gccctccctcagaacatgacctctcagatgttcagtgccattgccgctgtaacgggccag
ggccagaaccccaacaccacacctgccggttgggcatccagccagtatggctacactggg
gacagcagcggtggggggggcagcagcagcgcctatcacgtgtttgccacaccagctcag
cagcccattgctactccccttctgacgccaagctattcgtacaccacccccacccctagc
cagcagcagactatcaccacaccccaataccccagcagcactccccagtcctcacacggg
tcacaaggacatggacaccgcccttcctcctccacaccaacatcatcatcctcttcccgc
catcacaggacaccaacaccaaaggcaacttcccacacagcagtggactggggcaagatg
gccgagcagtggctccaggagaaagaggcagagcgcaagaagacgaggcccagaatgacc
ccacgaccttctcccagccccatgatcgagagcacgcccatgtccctcgctggagacgcc
acaccgctgctggatgagatggatcgctag
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integrated database retrieval system
