Oncorhynchus masou masou (cherry salmon): 135547079
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Entry
135547079 CDS
T10723
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omm04147
]
135547079
00535 Proteoglycans [BR:
omm00535
]
135547079
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135547079
Exosome [BR:
omm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135547079
Proteoglycans [BR:
omm00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
135547079
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135547079
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
135547079
NCBI-ProteinID:
XP_064831802
LinkDB
All DBs
Position
10:complement(6040963..6223573)
Genome browser
AA seq
1484 aa
AA seq
DB search
MDCKIGFQLSISLLVVVLVGRCEALWFSWGSTDGTTEAPSLDNEGSENPVTSNESPTPEN
IEEMGADIIDIESGIHKFAQTWNQNAKATEAPKLTTLRSKARNERPMEKGAGRPTSRGSK
PDEISVSLLQLIGDPPPDEITKIYGPDNSPGYVFGPDANTGQLAHAHLPSPFYRDFSLLF
NLKPQSTKGGVIFSVTDASQKIMYVGVKLSPVKANKQNVIFYYTEPDSQVSYVAATFPVH
NLADQWNRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMALEAGAGVFVGQAGGADPDK
FLGVIGELRVVGNPRAAERQCEEEGDDSDVASGDGGSGDVEGKLDGKKKGSGTFKWDAEV
QKYVWVEDDRPTVTTTPPSSRPIQQPPVTRQQPEVSSKKETGPGGSRGEKGDRGEKGDRG
PFGPKGDSGSELGTRGGARGEKGVPGEKGMKGKAGFGYPGSKGDPGPAGPPGPPGSPGPA
AEVVSRGDSSVIGTVAGPRGPAGTPGPAGPEGPAGADGEPGDPGEDGSQGLVGPPGFPGT
PGDSGLKGEKGDRGEGQPGPSGPPGPPGLPAPSSHDRPTFMDMEGSGFPDLEALRGLPGL
PGPPGLPGAPGPAVVGTGLSSSFGPQGPPGQDGAPGQPGLPGPPGTDGRPAVAGARGEKG
DPGELGLPGAVGAKGAQGLTGVPGQPGLGGLAGLPGPMGPVGQPGPPGPPGPSYHTGFDD
MEGSGVGVANGVPGARGPDGRQGTTGIPGLPGKPGFPGAPGEMGNEGLQGRDGRPGLDGF
PGPNGQKGDRGERGETGRDGNGQPGPPGPPGPPGQIIYQTSSSYDGVVGGAGPQGETGLP
GQAGFPGPIGSKGDKGDPGQPGYGVKGEKGEPGLIIGPDGSPLYLRELSGEKGDRGPAGP
VGPPGQYGPSGIKGEFGMPGRPGRPGVNGYKGEKGEPSTGAGFGYPGVPGPPGPPGPPVP
VDRFNGYDASRNYPATKGEKGDRGAQGLPGTPGVASNLDIFTFKNDLKGERGDSGVKGEK
GEPSGGYYDPRFRGQQGPPGPPGNPGLMGPKGDSIMGLPGPQGPPGSPGIGYDGRPGISG
PPGPPGPPGSPSLPGAYRPNHSINIPGPPGPAGPPGTPGHTSGVTVLRSYDTMIATARRQ
SEGTLIYIVDKTDLYIRVRNGFKQVLLGDYSPFHRDLDNEVAAVQPPPVVNYPQSQDHSA
NNGAEHFSQGGTATHPIKPPPHKPVEIPRPARPDIRNPDPRYPPQYDPRYPPQTDARYPP
QTDGRYSHVQPENRYPNQPESRFPVNPQRRPVPLPVPQPGGHLHTSGPGLHLIALNMPQV
GNMRGIRGSDFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRDSLPIINLKDQVLF
NSWESMFSKSGGRMKENAPIYSFDGRDILRDSAWPEKMVWHGSSNEGHRQTDNYCETWRA
GDREVTGLASSLQTGQLLQQLPSSCSSSYIVLCIENSSLSHSKK
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atggattgcaagattggattccagctgagtatctcccttttggtggtagtattggtgggc
cgttgtgaggcgttgtggttttcctggggcagtacagatggcaccactgaggccccatcg
cttgacaatgagggatctgagaacccagtgactagcaatgaatcaccaacgccagagaac
attgaggaaatgggggcagatatcattgacatagaaagcgggatacataagtttgcgcaa
acttggaaccagaatgcaaaggccacggaggcccccaagctgaccactttgaggtcaaaa
gccaggaatgagcgcccaatggaaaagggtgccggtcggcccacgtcaaggggaagcaaa
cctgatgagatcagtgtctccctcctgcaactgatcggggaccctcccccagacgagatc
accaagatctatggtcccgacaacagccccggctacgttttcggtcccgacgccaacacg
ggccagttggcacatgcccatcttcccagccccttctaccgggacttctccctcctcttc
aacctgaagccccagtccaccaagggcggagtcatcttttcggtcacagacgcctcgcag
aagatcatgtatgtgggcgtcaagctgtcgccggtcaaagcgaacaagcagaatgtcatc
ttctactacacggagcccgactcgcaggtgtcgtacgtggcggccaccttccccgtgcac
aacctggccgaccagtggaaccgcttctccatctccgtgctggacgacaaggtcaccttc
tacatcaactgcgacgaccaaccccaggtggtacgcttcgagaggtccccggatgagatg
gcgctggaggccggagccggagtgttcgtgggccaagccggaggggccgatcccgataag
ttcctgggggtgattggggagctgagggttgttggaaacccccgggctgctgaaagacag
tgtgaggaggaaggggacgactcggatgtggcttcaggagatggcggaagcggcgatgtg
gaagggaaactggacgggaagaagaaaggctcgggtactttcaaatgggacgcggaggta
caaaaatatgtgtgggttgaggacgacagaccgacagttacgactacccctccgtcgtca
cgcccaattcagcagcccccagtgacccggcaacaaccagaggtgtcttccaagaaagag
actggcccaggtggatctagaggagagaagggtgacagaggagagaaaggagacaggggt
cctttcggtccaaagggagattctgggtctgagttgggcacacgaggaggggcacgtgga
gagaagggagtgcctggagaaaagggaatgaagggaaaagcaggcttcggataccctggg
tcgaagggcgaccccggccccgctggtccccccggaccgccaggctccccggggcccgcg
gctgaggtggtatcacgtggcgacagctccgtgattgggacggttgcgggtcccagagga
ccagctggaactccgggacctgcaggccctgaggggcccgcaggagctgatggagagcct
ggtgatcctggtgaagatggttctcaaggccttgttggaccgccaggcttccctggaacc
ccaggagactctgggctcaaaggagagaagggtgaccgtggtgagggccagccgggcccc
agtggacctcccggacccccaggactcccagcgccatccagtcacgaccggccgaccttt
atggacatggaaggctctgggttccctgacttggaggctcttcggggactgcctggtttg
cctggccctcctggactccccggggccccaggtcctgccgttgttggtacagggctctct
agctcgtttggcccccaaggtcccccaggacaagatggtgcccctggtcaaccggggtta
cccggcccacctggtactgatggtcgcccagcagttgcaggggccaggggagagaagggt
gacccaggtgaactcggtcttccgggagcagtcggcgcaaagggcgcacagggattgact
ggtgtccctggtcagccaggactgggcggattggctggccttcctggaccaatgggacca
gtgggacaacccgggccaccaggaccccccggaccaagctatcacactggctttgatgac
atggaaggctctggtgtgggagtggccaatggggttcctggagcccgagggccagatggg
cgacagggtactactggcatccctggcctaccgggaaagcctggtttccctggtgctcct
ggtgagatgggaaatgaaggactacaaggaagagatggccgaccagggttggacggtttc
cctggacctaatggacaaaagggggacagaggagaaagaggcgaaactggtcgcgatgga
aatggacagcctggaccaccaggcccacccggcccaccaggacaaataatctaccagacc
tccagcagctatgatggtgtcgttggaggagctgggccccagggtgaaactggtcttcct
ggccaagctggattccctggtcctattggatcaaagggtgacaagggagacccaggccag
cccggttatggagtcaagggcgagaagggcgagcctggcttaatcattgggcctgatggg
agtcctttgtacctgcgagaattgtcgggtgagaagggagacagaggacctgccggaccc
gtcgggcctcctgggcagtatggaccttctgggataaagggtgaatttggaatgccggga
agacctggtcgccctggtgtaaacggatacaagggtgaaaaaggagagccatccacaggt
gccggatttggctacccaggtgtcccaggcccacccggacccccaggaccacccgtgcct
gtggaccgcttcaacggatatgacgcctcaaggaattatccagcgacaaagggggagaaa
ggtgatcgcggagctcaaggtctcccaggaacgccaggtgtggcctctaacttagatata
ttcacattcaagaatgacctgaaaggagagcgtggggattctggcgtgaagggggagaag
ggagagccaagtggtggctattatgacccccgttttagaggacaacaaggcccaccagga
ccccctggaaacccaggacttatgggtccaaagggagattcaatcatgggcctccctggt
ccccagggcccaccaggctccccagggatcggctacgatggtcgtccaggaatttcaggc
ccaccaggtcctcccgggcccccagggtccccctcactaccaggggcctatagacctaac
cactccatcaatattcctggcccccccggacctgctggaccacctggaactcctggtcac
acttcaggggtgacagttttgaggtcatacgacaccatgattgctactgcaagacgccag
tcggagggcaccctcatctacattgtcgacaaaacagatctctacatccgagtccgcaat
ggattcaaacaagtcctgctcggtgactacagtcccttccacagagatctggacaacgaa
gtagcggctgtccagcccccccctgtcgtcaactacccccagtcccaggatcactcggcc
aacaatggagctgaacacttctcccaaggcggtaccgccacccaccccatcaagcctcct
cctcacaagccggtggagatccccaggcctgccagacccgacatccgcaaccccgacccc
agatatccccctcagtacgaccccagatatccccctcagactgacgctaggtacccccct
cagacagatggccgctacagccatgtgcagcctgagaacaggtatcccaaccagcccgaa
agccgattcccagtcaacccccagagaagacccgttccccttcctgttccccagcctggc
ggtcacttgcatacatcagggccaggactccacctgatcgccctgaacatgccccaagtg
ggcaacatgcggggcattcgtgggtcagacttcctgtgtttccagcaggctcgtgctgtg
ggcctgaagggcaccttcagggctttcttgtcctccaagctccaggacctctacagcatt
gttcgcaagtccgacagagacagcctccccatcataaacctgaaggaccaagtgctgttt
aatagctgggagtctatgttcagtaagtctgggggcaggatgaaggaaaatgcaccaatc
tactcctttgatggcagagatatcctgagggacagtgcatggcctgaaaaaatggtctgg
cacggctctagcaacgagggtcaccgccagactgacaactactgcgagacatggagggcc
ggagaccgcgaggtgacaggtctagcgtcctcactgcagaccggccagctcctacaacag
ttgcccagcagttgctctagctcctacatagtgctgtgtatcgagaacagctctctctca
cactccaaaaaataa
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integrated database retrieval system
