Oncorhynchus masou masou (cherry salmon): 135547156
Help
Entry
135547156 CDS
T10723
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135547156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135547156
Spliceosome [BR:
omm03041
]
Complex A
U1 snRNP components
U1 related factors
135547156
Complex B
135547156
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
CEP164_N
Motif
Other DBs
NCBI-GeneID:
135547156
NCBI-ProteinID:
XP_064831947
LinkDB
All DBs
Position
10:complement(12565609..12595466)
Genome browser
AA seq
889 aa
AA seq
DB search
MSSDGNNGQSQAPPFAGVPTSGMPPPFMGPPGMPPHYPPMGIPPMGQRPPNMAPMPPGMM
PPGMMPPMGQMPGMMPPMMPGMMMPPHMSAAAMQPTGPPGVDTTVTTAPGTVGTTNGTPQ
DDQPKKKSVWTEHKSMDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYKSDNGK
AYYYNSQTKESRWTKPKELEDLEAMIKAEENGTSEVGAPCAVIAPTLQPDSAAVMATMMM
EMPVMMPITTVLEEQMSQVPMHVAEVSAEVPVNSTEEVVGMEASASNDASKDERPELVKK
TYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKV
QTEKEEKEEARLKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPERDRLE
IYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAED
EELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQ
LHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKNFLVEVNTSFEDFGSVISSDKRAMTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEATFKSMLKQATPALEPEATWEGVRERFIKESAFEDVTLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSRSGSESDGEDDYHNKKKKRSQSKSPSERS
SSGESERSYKKSKKHKKKGKKRRHKSQSPESEGERKDKGRERDSKREKDQEKEKESDKSR
GKSRSDSKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcacctccttttgctggggtcccaacc
tcaggcatgccaccgccttttatgggaccaccgggaatgccgcctcattacccaccaatg
ggaattccacccatgggacagaggcctcccaacatggctcccatgccccctggcatgatg
ccacctggcatgatgccaccgatgggacagatgccaggcatgatgccacctatgatgccc
gggatgatgatgccccctcacatgtctgctgcggcgatgcagccaacaggaccgcctgga
gtggacacaactgtcactactgcacctggaacagttggtaccacaaatggcacaccacag
gatgaccaaccgaagaagaagtctgtgtggacagaacacaagtccatggatgggaagacc
tactactacaacaccgagaccaagcagtcttcctgggagaagcctgatgacttgaaatct
cctgcagaacaaatgctgtcaaaatgcccatggaaggagtataaatcagacaatggcaag
gcgtactactacaactcccagactaaggagtcccggtggaccaaacccaaagagcttgaa
gatctagaagccatgataaaagccgaggagaatgggacatcggaggtaggcgctccttgc
gcagtaatcgcccccacccttcagcctgacagtgctgctgtcatggcaaccatgatgatg
gaaatgccggtcatgatgccgattacaacagttttggaggaacagatgtcccaggtgccc
atgcatgtagcggaggtcagcgctgaggtgcctgtgaactccacagaagaagtggtcggc
atggaggcctcagccagtaatgatgcttcaaaggatgagaggccagagctggtgaagaaa
acgtacaagtggaacacgaaagaagaggccaagcaggcctttaaagagctcctgaaggag
aagggcgtatcatccaatgcgtcttgggaacaagccatgaaaatgatcatcaatgaccca
cgctacagtgccctgcccaaattaagcgagaaaaagcaggccttcaatgcttacaaggtg
cagacagagaaagaggagaaggaggaggccagactcaaatacaaggagtccaaggaaacg
tatcagagatttttggagaatcacgagaaaatgacatctaccaccagatacaagaaagca
gagcagatgtttgcagagctggacgtgtggagcaccgtcccagagagagaccgactggag
atctatgaagatgtcctattctacctggccaagaaggagaaggagcaagccaagcagctg
aggaagaggaactgggaggcgctgaagaacatcctggacaacatggccaacgtgacctac
cgcaccacctggtccgaggcccagcagtacctgctggacaaccccaccttcgcagaggac
gaggagctccagaacatggacaaagaggatgctctgatctgtttcgaggagcacatccgc
gcgctggagaaggaggaggaggacgagaagcagaagactttgctgagggagaggaggagg
cagcgcaagaacagagagtccttccagaaattcctggacgagctccatgaccacggtcaa
ctccactccatgtctgcctggatggagatgtaccccaccgtcagctcagacatccgcttc
gccaacatgctgggccagccagtttatggtgtctattctgcaggctccactcccctcgat
ctgttcaagttctatgtggaagacctgaaggctcgctaccacgacgagaagaggatcatt
aaggatatcctgaaggacaaaaacttcctggtggaggtcaacactagctttgaagacttt
ggctctgtgatcagctcagacaagagagccatgacgctggacgcaggcaacatcaagctg
gccttcaacagtttgctggagaaggcagaggctcgggagagggagcgggagaaggaggag
gccaggaagatgaagaggaaagaggctacctttaagagcatgttgaagcaggccaccccg
gccctggaaccagaggccacctgggagggggtccgagaaaggttcatcaaagaatctgcg
ttcgaagacgtgactttggagtctgagaggaaaaggatattcaaagacttcatgcatgtc
ttggagcacgagtgccagcatcatcactccaagaccaagaaacattccaagaagtccaag
aagcaccacaggaagcgctcccggtctcgatcgcgatcgggctcggagtctgatggtgaa
gacgattatcacaacaagaagaagaagcgctcacagtccaagtccccatccgagcgctcc
tccagcggtgaatctgagagaagttataagaagtccaagaagcacaagaagaagggaaag
aagaggcgtcacaagtcgcagtctcctgaatctgaaggtgaacgaaaagataaaggaaga
gagagggacagcaagcgtgagaaggaccaggagaaggagaaagagagcgacaagtcccgg
gggaagagtcgctctgactccaagcagaagtctcctaaaaggaaatctaccaaggaggag
gggggctgggacacatcaggcagcgagctgagtgaaggagagctggagaagaggaggagg
actctactagaacagctggatgctccttaa
DBGET
integrated database retrieval system
