Oncorhynchus masou masou (cherry salmon): 135547182
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Entry
135547182 CDS
T10723
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1-like
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04622
RIG-I-like receptor signaling pathway
omm05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
135547182
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
135547182
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
omm04054
]
135547182
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135547182
Pattern recognition receptors [BR:
omm04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
135547182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
ResIII
Helicase_C
CARD
SWI2_SNF2
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135547182
NCBI-ProteinID:
XP_064832011
LinkDB
All DBs
Position
10:complement(13981036..14000911)
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AA seq
1002 aa
AA seq
DB search
MATDKDNTANISLIEDFRPRLRKLIEIDFVLDHLNFLDNDNKDLIRTKARKESNLKAVDL
LIDTIVRIRPLPNGWFREFVDALSAGGCKHAATYVENSPPCPALEAENDNCVRLIELLSP
SLLAMKTTDVCWDCFSKGILTTEDREIILAECQNRGNMGGARELLRRIVRFPPGWFSIFL
KSLQVTEHNDLCKELTGESPGDNLIDEPGVLMAVNEAPGNVDPMVEEGPVEAAGKSFLPE
QETLDSSVTSMHLDEPSEADSEIADIYSGTEEPMENGKPENSLDLSMSGCIAPAAESSPK
AVIVLRDYQMDVARPALEGKNIIICLPTGSGKTRVAVYITKEHLDSRRKEGRPGKVVVLV
NKVPLVEQHYSTEFWKFLKNKYKVERVSGDSQLKISFTDIVQKNDIVICTAQLLENYLER
AHSGDDDGIQLSDLSLIVIDECHHTQKGGVYNHIMIRYLKQKHKNAKLKKEQKDTVAIPQ
ILGLTASPGVGGAKKIDKAEEHILRICANLDAYKIMTGNLGENKKEPHKKIATAEERKED
PFGDVLKGVMNAIHVHAELNPTCDLGTQNYEQWVVQKEQNAAKEENQKVRVCAEHLRQYN
EALYLGKTIRMWDAFSFLDKYFDEELKKKVAPEDEEAIIKTDTERFLFTLFKDSKVKLQE
LAKLPQYENNSLAKLRTKILHEFTSREKARGIIFTKTRRSAIALAQWVQENSKFEEVGVK
ACHVIGGGGQSVVKPMTAAEQRDVLNKFQNAEINLLIATTVAEEGLDIAACNFVIRYELV
TNEIAMIQARGRGRAEDSSYTLVAGEGSGVAERESVNEYREKMMSKAIDKVKKLDQEEYE
KRIKEFQIQAIMEEKVRTTKKKQKGMKKESPSKVKFSCRSCNKPVCSGEDVEIIENMHRV
NVTPQFKELFIQRENTSLVKRLLDYETNGFIACKDCGQRWGSMMLYRGIECPCLHVKNFL
VKYDEKRKNVNKWSELGIQLPAFDYAEHARSVAESSEDEESM
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggccactgacaaagataacaccgccaacatcagtctgattgaggacttcagaccgagg
ctgcggaaactcattgaaatcgattttgtactggatcacctgaacttcttagacaatgac
aacaaggacttgatccgaactaaggcgagaaaagagagcaatctaaaggcagtggatcta
cttattgatacaatcgtcaggatccggccacttccgaatggttggttcagggagtttgtg
gatgcactgtcagctgggggttgtaaacatgctgccacctacgtggagaatagccctcca
tgtcctgctctggaggcagagaatgacaactgcgtcagactaattgaacttctgtcgcca
agtcttttggcgatgaagactactgatgtttgctgggattgtttttctaaaggtattctc
accacagaggaccgtgaaattattttagctgaatgtcaaaaccgaggaaatatgggtggt
gctcgtgaactgctcaggagaatcgtgagattcccgcccggatggttctccatcttcttg
aagtccttacaggtcactgaacacaatgacctgtgtaaagaattgacaggggagtcacct
ggtgataacttgatagatgagccaggtgtcctgatggctgtgaatgaagctccagggaat
gtggatcccatggtggaggagggtcctgtagaagcagcggggaaatcttttctcccagag
caggagacattggatagcagtgtgaccagcatgcatctggatgaaccttcagaggctgac
tcagaaattgcagacatatatagtggcacagaagaaccaatggaaaatgggaaaccggaa
aatagcttggatctctcaatgtcaggctgcattgcccctgctgctgaaagctccccaaaa
gctgtcattgttcttcgagattatcagatggacgtggccaggcccgccttggagggaaaa
aacatcatcatatgcctcccgacaggaagtggtaaaaccagagttgctgtctatattacc
aaagaacatctggacagcaggaggaaagagggccgaccagggaaagtggtcgtcttggtg
aacaaggtgcccctggtcgagcagcattactccacagagttctggaagttccttaaaaac
aaatacaaagttgagagggtcagtggggactcccagctcaaaatctccttcacagacatt
gtccagaaaaatgatattgtcatctgtacagcccagcttctagagaactacttggaaagg
gctcacagtggagatgacgatgggattcaactttcagatttgtcactgattgtgatcgat
gagtgccaccacacacagaagggaggagtctataaccacatcatgatccgctacctcaag
cagaagcacaagaacgccaagttaaagaaagagcagaaggatacagtggccatcccacag
atcctaggcttgaccgcctcacccggcgtcgggggagccaagaaaattgataaagcagaa
gagcacattctacgaatctgcgcaaacttggacgcatacaaaataatgacggggaacctt
ggggaaaacaaaaaagaaccacacaaaaaaatagccactgccgaggagagaaaagaggat
ccctttggcgatgttctcaaaggagtcatgaatgccattcacgtccatgctgaactgaac
cctacctgtgacctaggcacccagaactatgagcagtgggtggtccagaaagaacaaaat
gctgcaaaagaggagaatcaaaaagtgcgagtttgtgctgagcatctacggcagtacaac
gaggccctgtacctaggcaaaaccatccgcatgtgggatgccttcagcttcctggacaaa
tactttgacgaggagctgaagaagaaagtggccccagaggacgaggaggccatcataaag
actgatacagagcgattccttttcacactctttaaagatagcaaagtgaaactgcaggag
ttggctaagcttccccagtatgaaaataatagcctagctaagctgagaaccaaaatcctg
catgagtttacatctagagaaaaggctagagggatcattttcacgaaaacccgtcgcagt
gccatcgcattagctcaatgggttcaggaaaactccaagttcgaggaggtcggagtaaaa
gcttgccatgtgattggaggaggaggccagagtgtcgtgaaaccaatgaccgctgcagaa
caaagggatgttttgaacaagtttcagaatgcggagatcaacttgctgattgcaacaaca
gtggccgaagagggtctggacatagcagcatgtaactttgtgatacgatatgagcttgtg
accaatgagatcgctatgattcaggcccgaggcagaggcagagctgaggacagtagttat
accttagtggcaggggagggttctggggtcgccgaacgagagagtgtcaacgagtaccgt
gagaagatgatgagcaaagctatcgataaagtcaagaaattagatcaagaggaatatgaa
aagaggattaaagaattccagattcaggcaatcatggaggaaaaagtgcgaacaaccaag
aagaagcagaaaggaatgaaaaaggagagcccgtccaaagtgaagttcagttgtagaagc
tgcaacaaaccagtctgctctggggaagatgttgaaatcattgaaaatatgcacagagtc
aacgtaacaccccaatttaaggaacttttcattcaaagagaaaacacctcacttgttaaa
aggctcctggactacgagaccaatggtttcatagcatgcaaagactgtggacagaggtgg
ggttcaatgatgctctaccgtggaatcgagtgtccctgtcttcacgtcaagaacttcctg
gtgaagtatgatgaaaagaggaagaacgtcaacaagtggagcgagctgggtatccagtta
cctgcctttgactatgctgaacacgctcgatctgtggccgaaagctctgaggatgaagaa
tcaatgtaa
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