Oncorhynchus masou masou (cherry salmon): 135548063
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Entry
135548063 CDS
T10723
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
135548063 (taf1c)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135548063
NCBI-ProteinID:
XP_064833367
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Position
11:8280415..8292134
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AA seq
1080 aa
AA seq
DB search
MDYIFPRKLFPVYFNSGPPSSTHRHNVGGWGSYGQVLDVNVPLHENDSLPKVDWKFESQH
QVKGEPWVPVEPIAIPLLRPKRGPKWSSTALSDPMDFSEHMQNFYQYKYKDAFCTMSHIL
GEKFDFGQGRRKGSEKNAVHMWQMEHFMHTFKYKKCELTHFGRQAKRYHNLLSDVIHDIP
PALLADHLHEELTYQRGQEQFSDHATGGAMGYIPFTNTSNSQQGCLVYPGKAGLNRLNFH
RVVLEYQEGKPPCFDVSHKPLSFQLNGTIRQITIGLQQDECHVGVRCDHLCGVWMVSEKD
IPESLEVIQTKQPATCLSASPHVQGELLVASESGAAYLWTVGRGLQKFRQEYSNLYFNSK
SSWRWCDFSGHPRVMVYADRTGVELTDIRTKDSYSHTLFRIGQTPDCKSGERVILSNYLR
DVHTFHHLVTTQHSAYVMDERSPCLPMIQWDHMMEHPPMFSQVVAGLPSGGGTTKVLLGS
QRSQEVILLQYSGGREEACVTRGPPRALLSPRDSLGHLPVQLPHRQHHAQDRLAKPAAGL
TVIHQSRAKEDCICVLQLTEAGDIFYHTLKSQTESFSEDDPPTPTQNSVGPEGRSEDVQR
LKQPVEPLRQGCNQTLGTPRSSTLDETWYSSGPPSPVDDSGFEGRGQPWDTPRAGLEMVI
NDPHDDPYPWQATNTGLTDTQETSDIVPTARSLDTNVNINPVRPKAKVSDEALLVWRKWF
LKLFKCPWERRHLPHKTTKTKDLLPDDSLRRDPLEDPCRRTLREDLRETMRNGNVLVHRN
TCLKPLALVPVPAPVEPSEWADVLSERMSASWEPGLGGWRSWWEERLGLNREEKVEALRR
KRRRQKRAKAHSRIDLSGSFTSSVSYQSDLDSASLSGWSSAASQYASSDVDSVATSCDNT
KWVTLSEPGTPRATTPTPQTSSSQPTTPRREFGSKPTTPLDQLSSFLSQPTIPYSQSSSS
SQPTIPHTQFTSSEPLFTPKKQPTIGKSSPWTTAGTDSSAADILRTVVGTQKPKNLDYLN
SLFGSQEPMDASQEAGFNESRHNTPLATSSQLSSISTSQRNLKVGLTSSQPKRKKSRMGF
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggattacattttcccacggaaacttttcccggtttatttcaactctgggccccccagt
tctacgcatagacataacgtcggaggttggggttcctatggtcaagtgttggacgtaaac
gtccctctacacgagaatgacagtctaccaaaagtagattggaagtttgaatctcaacac
caagtgaagggagagccttgggtgccagtggaacctatagcaataccacttctgcgacca
aaaagaggccccaaatggtcatcaacagctctgtcagatcctatggacttctcagagcat
atgcagaacttctaccagtataagtacaaggatgctttttgcacaatgagccatatcctg
ggggagaaattcgactttggacaggggaggagaaagggaagtgaaaaaaatgctgttcac
atgtggcagatggagcacttcatgcacacatttaaatacaaaaagtgcgagttaactcat
tttgggcggcaggccaaaaggtaccacaacctgttatcagatgtgatccatgacatccct
ccagccctgctagctgatcatctccatgaggagctgacctatcagagagggcaggagcag
ttctctgaccacgccacagggggtgcaatggggtacattccctttaccaataccagtaac
tctcagcaaggctgtctggtgtaccctgggaaagctggcctaaacaggcttaacttccac
cgggtggtgctagagtaccaagaagggaagcctccgtgttttgatgtgagccacaagcct
ctctcattccagctcaatggtacaatcagacagatcaccatcggccttcagcaggatgaa
tgtcacgtgggggtgcgctgtgaccacctgtgtggtgtctggatggtcagtgagaaggac
atccctgagtctctggaggtcattcagaccaagcagcctgctacatgtctcagtgccagt
ccccatgtccagggagagctcctggtggccagtgagagtggagctgcctatctatggact
gtgggccgaggtttgcagaagttccgtcaggagtacagtaacctgtacttcaattctaag
tcgtcatggagatggtgtgacttctctggccaccccagggtgatggtgtatgctgaccgg
acaggtgtggagctcactgatatcaggaccaaagatagttatagccacacgctgtttcgt
atcggccaaactcctgactgtaagagtggagagagagtcatcctgtccaattacctgaga
gatgtccacaccttccaccacctcgtcaccacacagcactctgcttacgtcatggatgag
cgttccccctgcctccccatgatccagtgggatcacatgatggagcaccctcccatgttt
tcccaggtcgtggcggggttgccgtcggggggcgggactactaaggtgctgctgggctct
cagagatcacaggaagtgattctgctacagtactcgggtggtagggaggaggcctgcgtc
accagaggcccacctcgggccttgctcagccccagagacagccttggacacctgcctgtc
caactcccccacagacagcaccatgcccaggacagactagccaagcctgctgctggtctt
accgtcatccatcagagccgagccaaggaggactgtatctgtgtgctgcaactcactgag
gccggagacatcttttaccacacactaaagtcccagactgagtccttcagtgaagacgac
ccaccgacgccaacccagaactccgtgggacccgagggacgtagcgaagacgtacagaga
ctcaaacaaccagttgaaccgttaagacaagggtgcaatcaaacgttaggaaccccaaga
agcagtaccctagatgagacatggtattcctctggacccccatctcctgtggatgactct
gggttcgagggaagggggcagccgtgggacacacctagggcgggactggagatggttatc
aacgaccctcatgacgacccgtacccgtggcaagcaacaaacacaggattaactgatact
caggaaacctctgatatagttcctacagcccggtctttggacactaatgttaacattaac
cccgtcaggccaaaggctaaagtcagtgatgaggctctgttggtttggaggaagtggttc
ctcaaactgttcaagtgcccctgggagcgccgccatctcccgcacaagaccacaaaaacc
aaggatcttctacccgacgacagccttcggagagacccgttggaagatccctgtcgtcgg
accctgagggaggacctgagggagaccatgaggaatggaaatgttctcgtccacaggaac
acctgtctcaaacccctggctctggtccctgtcccggcacccgtggagccctctgagtgg
gctgatgtgctgagcgagaggatgagtgcatcgtgggagcctgggctggggggatggagg
agctggtgggaggagaggctggggctgaaccgagaggagaaggtggaggctctgcggagg
aagaggaggagacagaaacgggcaaaggctcacagtcgtatcgacctatcgggcagcttc
acctcgtccgtcagctaccaatcagacctggacagcgcttctctctccggttggtcgtcg
gcagccagtcagtacgccagctccgatgtagacagtgtggccacaagctgcgacaacacc
aagtgggtcaccctgtctgagccgggtacaccgagggctaccacaccaacaccacagacc
agtagctcacagcccacaacacctcgtagggagtttggttcaaaaccaactacaccactg
gaccagcttagtagtttcctctcccagcccactatcccctattcacagagcagtagtagt
tcacagcccactatcccccatacacagttcactagttccgagccactgtttacacccaaa
aaacagcccaccattggtaagtcgtctccctggacaacagcaggtactgactccagcgcg
gcggacattttgagaacggtggtgggaacccagaagcccaagaatctggattatttaaat
tctctttttggatcccaggagcctatggatgcctcacaggaagcaggatttaacgagagc
agacataatactcctttggccacctcttctcagctgtcctccatctctacttcacagagg
aatctgaaagtgggattaacctcctcacaacccaaaaggaagaagtctcgtatgggtttc
tga
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