Oncorhynchus masou masou (cherry salmon): 135548246
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Entry
135548246 CDS
T10723
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
omm03009
]
135548246 (ddx55)
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135548246 (ddx55)
Ribosome biogenesis [BR:
omm03009
]
Eukaryotic type
Pre-60S particles
Helicases
135548246 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SBF_like
DUF1340
YbjM
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
135548246
NCBI-ProteinID:
XP_064833706
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Position
11:complement(18352567..18357059)
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AA seq
607 aa
AA seq
DB search
MDNTTEGKWDSLPVKLNDGITQTLIELGFTHMTPVQSACIPLFMRNKDVAAEAVTGSGKT
LAFVIPIIEILIKREDKLKKMQVGALIVTPTRELALQISEVMGQFLQKFPQFRQILLIGG
SNPIEDVEKFKEQGANILIATPGRLEDMFRRKADGLDLALSVKFLEVLVLDEADRLLDMG
FEASLNVILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASCTQKTPA
RLCNYYTICRAEDKFNSLVAFLRQHKHEKQLVFFSTCACVEYFGRALEALIKSVTIHCIH
GKMKHKRNKIFSEFRSLKSGILVCTDVMARGIDIPEVHWVLQYDPPSCASAFVHRCGRTA
RIGNKGNATVFLLPMEESYVTFLSINQKCPLEQMAPVSDVVDVLPKVKALALADRAMFDR
GMRAFVSTVQAYAKHECSLIFRVKDLDFVALARGFALLRMPRMPELKGKNFPDFIETAID
TDNIRYKDKQREKLRQKLLIELKEKREERAAAPKRHNDKNKAWSRQKNRKDRRRKTAAKR
NRDEGSEMDDEDMKELLKDTRLLKRLKKGQISEEDFEKQVTAGPKSQRKTAAGPSEDPPS
SAGEEGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggacaacacaactgaaggaaaatgggatagtttacccgttaaacttaacgacggtatt
acgcaaactctcattgagcttggatttacacatatgacaccagttcagtctgcctgtatt
ccactgtttatgcgaaataaagatgtggctgccgaggctgtgactggcagtggaaagaca
ttggccttcgtgattcccatcatagagatacttataaagcgagaggacaaattgaagaaa
atgcaggttggtgctctgatcgtcacgccgaccagagagctggccctgcagatcagtgag
gtgatgggccagttcctccagaagttccctcagtttagacagattctgttgattggaggg
agcaaccccattgaggatgtggagaagtttaaggaacagggggccaacatattgattgcc
accccggggcgtctggaggacatgttcagaaggaaggcagacggtctggacctggccttg
tcagtcaagtttctggaggtcctggtcctggatgaggctgaccgcctactggatatgggc
tttgaggccagtctgaatgttatcctggggtacctccctaagcagcgtcgtacaggtctg
ttttcagccactcagactcaggagctggaaaaactggtgagagctggtctcaggaaccct
gtacgaatcacagtgaaggagaagggcgtggccgccagctgcacccagaaaacacctgcc
aggctctgcaactactacacaatctgcagagcagaggacaagtttaacagtctggtagcg
tttcttagacaacacaaacatgagaaacagctggtgttcttcagtacatgtgcgtgtgtg
gagtactttggccgagccttggaggccctgattaagagcgtcaccatccactgcatccac
ggcaagatgaaacacaaacgcaacaagatcttctcagagtttaggagcctaaagagtggt
atcctggtgtgtactgatgtcatggccagaggcattgatatcccagaagtccactgggta
ttgcagtacgacccccctagttgtgccagtgcctttgtgcaccggtgtggacggactgcg
cgcattggtaacaaaggcaacgccacagtcttcctgctccccatggaggaatcttacgtt
accttcctgtccatcaaccagaagtgtcctctggagcagatggccccagtgagtgacgtg
gtggatgttctgcccaaggtgaaggccctggctctggcagaccgggccatgtttgacagg
ggcatgagggcattcgtctccaccgtacaggcctacgccaaacacgagtgcagcctcatt
ttcagggtcaaagatctggactttgttgcgctggcccgtggcttcgccctcctccgcatg
cccaggatgcccgagctgaaagggaagaacttccctgacttcatagaaacggccatagac
acagacaatatccgctacaaggacaagcagcgggagaagctgaggcagaagctgctgatt
gagctaaaggagaagagggaggaaagggccgctgcccccaagagacacaacgataagaac
aaagcctggtccagacagaagaacaggaaggaccgcaggaggaagactgctgccaagagg
aaccgggatgagggctcggaaatggacgatgaggacatgaaggagctgttgaaagacact
cgtctcctgaagagattgaagaagggacagatcagcgaggaggactttgagaaacaggtg
acagcaggaccgaagagccagaggaagacagcagcaggcccctcagaggacccacccagc
tcagcgggagaggagggcgaatga
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