Oncorhynchus masou masou (cherry salmon): 135548487
Help
Entry
135548487 CDS
T10723
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135548487
09122 Translation
03013 Nucleocytoplasmic transport
135548487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135548487
03041 Spliceosome [BR:
omm03041
]
135548487
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
135548487
Spliceosome [BR:
omm03041
]
Complex C
Other components
EJC/TREX
135548487
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135548487
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Mucin
Motif
Other DBs
NCBI-GeneID:
135548487
NCBI-ProteinID:
XP_064834219
LinkDB
All DBs
Position
11:30053459..30122890
Genome browser
AA seq
1570 aa
AA seq
DB search
MATRIIPADWIKNWEKSGKHEFVQLCKNLAYKTNHDSTIKDIQAALYALCWHVIQGNFKL
DLSASVLCDMMDLRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLFFVPDAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHIVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFLPLIKSYMCEPLTLC
HILGFKFKFNQEPNEETPTSLYHIAAALLHHNLIELEDIYVHLMPLDASIVEEHKREITE
AKQIARKLTMVVVPSEKTEDKEREKEEEKNDKAPDNQKLGLLEALLRIGDWHHAQSIMDQ
MPSFYATSHKAIALALCQLLHLTVEPLYRRAGVPKGAKGCLLRPLKNKRAPRPAESFEDL
RRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQSEGRNDNVKDKMDTLLSCFLSIA
DQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTVD
RAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVVDSLKYLTSL
NYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTNT
LKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQIRNTKKSSQ
RLKDALLDHDLALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN
LSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEKSNRQQQKVH
KYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVKKLQ
LQVQVIEENPDVPMNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLAK
STKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIYT
VASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATGFDGGNKADQ
LDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVLNLGQALECR
VHKICLEEKEKRPDLYALAMGYSGQLKGRKAHMVPENEFHHKEQPVRSATPVSQQNGPGT
TAKPATNASKTEEGVGEDADRAKDKSQGAAKPANKANSTAAKVTTSNGNGAPNSTKTTKE
KDDKEKSGKEKKEKKEKTPGSTLETKGESRREKQRDERGAGGKEERAPREGKEKTPKADR
DKQKAEEKSNKEDNKAKTGNGEPKEPSRERDTGAKESKSKEKGGDRSAMSGSLKSPVPRL
ESAESERDHKRRKLETHSSPSHSSSVKDNSNEPKDSASKHHINYNSVARSKSRERETDKK
ESENTRGRSKEKKTEDKDRKDRKRDHMTTDREMSLESKRRKDENGTNSSNKHSKSASPCS
GSPVSADKEKTKRSKSSSKEKGESAKPERNSSGGKKESRHDKEKSDKKEKRDSSGGKDEK
KHHKSSDKHR
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacgtatcatccctgctgattggatcaaaaactgggaaaaatctggaaaacac
gagtttgtacaactatgtaagaatcttgcatacaaaacaaatcatgacagcacaataaaa
gacatacaggcagctttgtatgcgctctgctggcatgtcatacaggggaacttcaagctg
gacctttctgctagcgtcctctgtgacatgatggatctgcgggatgacatgccatccatt
ttagcagatgttttcagtatactagacatagagaccagctctttagaggaaaaaaacaaa
cgtgaccattacacccagctagtgggagcgtgtctgttctttgtgccagatgccattctg
aaggagaggctggacccagagaccctggagtccctgggactcataaagcaagctcatcag
ttcaaccagaaaatcgttaaaattaagaccaaactattttacaagcagcagaaattcaac
ttgctgagggaagagaatgagggctatgccaagctgatcactgagctgggccaagacctc
tcaggcaacatcactagccacatcgtcctagagagcatcaagtccctaataggatgcttc
aacctggaccccaaccgcgttctggacatcatcctggaggtgtacgagtgtcgctctgac
caagacgagttcttcctgcccctcatcaagtcctacatgtgtgaacccctcaccctctgc
cacatcctgggcttcaagttcaagttcaaccaggagccaaatgaggagacccccacgtca
ctctaccacatcgctgccgccctcttgcatcacaaccttatagagctggaggacatctat
gtgcacctgatgccactggatgccagcattgtagaggagcacaagagagaaatcacagag
gccaagcagatcgcccgcaagctcaccatggtggtggtgccctccgagaagactgaggac
aaggagagagagaaggaggaagagaagaacgacaaggctcctgataaccagaagctgggt
ctgttggaagcgctgctgaggatcggagactggcaccatgcccaaagcattatggaccag
atgccctccttctacgccacctctcacaaggccattgctctggcgctgtgccagctgctg
catctgactgtggagccactgtaccgcagagccggggtccccaaaggggccaagggatgt
ttgttgaggcccctgaagaacaagcgggcccccaggcctgcagagagctttgaggacctg
cgcagggatgtgttcagcatgctctgctacctggggccccacctctcacatgaccccatc
ctctttgccaagatagtacgcctgggcaagggctttatgaaagagtaccaaagtgagggt
agaaatgacaacgtcaaggacaaaatggacacattgctgagttgtttcctgagcattgca
gaccaggtgctgctgccctcgctatctctcatggagtgtaacgcctgcatgtcagaggag
ctctggggcctcttcaaactcttcccctaccagcacaggtaccggctatacgggcagtgg
aagaatgagacctacacaagccacccacttctagtcaaggtcaaagctcagactgtggat
agagccaaatacatcatgaagcgattaaccaaagagaatgtgaaaccatctgggcgccag
ataggcaagctgagccatagcaaccccaccatcctctttgactatatcctgtctcagatc
cagtggtatgacaacctcatcggtccagtggtagactcccttaaatacctcacctcactc
aactatgacgtcatggcttattgcataattgaagcgctggcaaatccagagaaagagaag
atgaagcatgacgacactacgatctcctcctggcttcagagcctggccagtctgtgtgga
gcggtattcaggaaatacccaattgagttagctggcctcctccagtatgtgaccaatacg
ctgaaagcagggaagagttttgacctgttgattctgaaagaggtggtgcagaagatggcc
gggatcgagatcactgacgagatgacatcagagcagatggaagctatgactggaggggag
cagctcaaagcagagggtggttactttggtcagatccgtaacactaagaagtcgtcccag
cgtctaaaggatgccctgttggaccatgatctggccctacccctctgtctcctcatggcc
cagcaacgcaacggggtggtctttctggaggggggtgagaaacacctcaaactggtgggc
aagctgtacgaccagtgtcacgacaccctggtgcagtttggtggcttcctggcctccaac
ctgagtactgaggactacatcaagcgtgttccctccattgacatcctctgtaaccagttc
cacacgccccacgatgctgccttcttcctctcacgccccatgtatggacatcagatcctg
tctaagtatgatgagctgaagaaagctgagaagagcaaccggcagcagcagaaggtccat
aagtacgtggctgcgtgcgagctggtgatgtcgccggtgcacgaggccgtggtgtccctg
cacccaccccgtgtctgggacgacctccgaccccagttctacgccaccttctggtcgctg
accatgtacgacctggccgtgccacacaacgcctacgaccgcgaggtgaagaagctccag
ctccaggtgcaggtcatcgaggagaaccctgatgtgccaatgaacaagaagaagaaggag
aaggagcgctgcacggccctacaggagaagctgcaggaggaggagaagaagcagctggag
cacgtccagagggtcctgcaccgcctcaaactggagaaggacaactggctcctcgctaaa
tccaccaagaatgagaccatcactaagtttctgcagctgtgtctgtttcctcgctgtatc
ttctctgccatcgacgctgtgtactgcgcccgctttgtggagctggtgcaccagcagaag
acacccaacttctgcaccctgctctgctatgaccgggtgttctctgacatcatctacacg
gtggccagctgcacggagaacgagtcgcgacgctacggccgcttcttgtgctgcatgttg
gagacggtgacccgttggcacagtgaccgagctgtctacgagaaggagtgtggtaactac
ccaggcttcctgaccattttcagagccacaggctttgacggagggaacaaagcagaccag
ctggactatgagaacttcagacatgtagtgcacaaatggcactacaagctgactaaagca
tcagtccactgcttggagactggggaatacacccacatccggaacatcctgattgtgctg
accaaaatcctgccctgctaccccaaagtgctgaacctgggccaggcactcgagtgccgt
gtccacaagatctgtctggaggagaaggagaagaggccagacctctatgccttggctatg
ggctattctggccagttgaaaggcaggaaggcacacatggttcctgagaatgagttccac
cacaaggagcagccggtgaggagcgccacccctgtcagccagcaaaacggccctggcacc
acggccaagcctgccaccaacgccagcaagacagaggagggtgtcggtgaggacgccgat
cgagccaaggataaatctcagggtgcagcgaagccagcgaacaaagccaacagcacagcg
gccaaagtgaccaccagcaacgggaatggggctcctaacagcaccaaaaccaccaaagag
aaggatgacaaagaaaagagcgggaaggagaaaaaagagaaaaaggagaagactccaggc
agcactctagagacgaagggggagagccggcgggagaagcagagagacgagagaggagca
ggcggcaaggaggagcgggcgccacgcgagggtaaggagaagacgcccaaggcagaccgg
gacaagcagaaggcggaagagaagagcaacaaagaggacaacaaggccaagaccggcaac
ggagagcccaaggagccatccagggaacgcgacaccggagccaaggagtctaagagcaaa
gagaagggaggagacaggagtgccatgtccggatccctcaagtctccagttccccgattg
gagtctgctgaatctgagagggatcacaaaaggcgaaaactggagacccactcttcacca
tcccattcctcctctgttaaggacaatagcaacgaacccaaggactctgcatccaagcac
cacatcaactacaattcggtcgcgcggtccaagagcagagagagggagacggacaagaaa
gagtcagagaatacccgaggccgttccaaagagaagaagaccgaagacaaagaccgaaag
gacaggaagagagatcatatgaccactgaccgtgagatgagcctagaatccaaacgcaga
aaagatgaaaatggaaccaattcctccaacaaacacagcaagagcgccagtccctgctca
ggctccccagtctcggctgacaaagagaagaccaagaggtcaaagtcctctagcaaggag
aagggagagtctgctaaacctgagagaaactcctccgggggcaagaaggagtctaggcac
gacaaagaaaaatctgacaagaaggagaagagggacagcagtggtggaaaggatgagaaa
aaacatcataagtcttctgacaagcacagataa
DBGET
integrated database retrieval system
