Oncorhynchus masou masou (cherry salmon): 135549656
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Entry
135549656 CDS
T10723
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135549656 (vps50)
Membrane trafficking [BR:
omm04131
]
Protein recycling
Others
EARP complex
135549656 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
135549656
NCBI-ProteinID:
XP_064835902
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All DBs
Position
12:complement(19245094..19476811)
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AA seq
1002 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESIADLSPVEDFRIPSKEEMREMREQPIDPQAEQEIINSIQEV
YYSNDSFDMVQHELEKLPPELNLQELEEYRDKLKRQQAAVSKKVADLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLSISKEDFTEASLGLLANQRRRHLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTRVQLAYTLLEKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITQDSYVPCLSDLCKALWEVMLSYHRTMQWHEEQDKEDPPPTTDE
AGAADTEEAVVDHSYVKKKLEHGLTRIWQEVQLKVKAYLLGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSKSELLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQSRSPSVSPSRQVLSSQDQVLSSKDQEVLSLFQHFSQEGNPFERHIDNKD
EETEDVLASNGYESDELEKCVYQDYDSDSDVPDELKQDYVDEQTGDVPLKSASRETLRSR
KKSDYSLNKGSNAPILTNTTLNVIRLVGKYIQMMNILKPIAFDVIHCVSQLFDYYLYAVY
TFFGRNDMPAPSLGVPGSQGGREAGPARPVAPFCWYESSGPGLISSRLRTTLNRIQESLI
QMDSLGEGSSSVHGGPGEDRKEKVPSPHLSQLVVLTASETLYGLAQRVVATESLVFLAEQ
FEFLQSHLDTMMPAAKKPFLQQFYSQTVSTASELRKPIYWVVAAKALDYEQMLLLMAGVK
WDIREIMSQHNVYVDVLLKEFEEFNKRLGDVSRHVRVPLPVSNVLWEHCIRLANRTLVEG
YGNVKKCSNEGRALMQLDFQQFLMKLEKLTDMRPIPDKDFVETYIKAYYLTENDMEQFIK
NHREYSMKQLANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagataaagtcacttatggcccggcagggcctgaaaagcccacaggagagcatt
gcagacctcagcccagtggaggacttcaggatcccaagcaaggaggagatgagggagatg
agggagcagcccatcgacccccaggcggagcaggagatcattaacagcatccaggaggtc
tactactccaacgactcctttgacatggtgcagcacgagctggagaaactcccacctgag
ctgaacttgcaggagctggaggagtacagagacaagctgaagagacaacaagcagcggtt
tccaaaaaagttgccgatcttatcctggaaaaacagccgtcctacgttaaggagttggag
agggtgacgtcattacaaaccaatctacagctggctgcagtgatttgcaccaatgctagg
aggcagctgagtatttcaaaggaggacttcaccgaggccagcctggggctcctagccaat
cagaggaggagacacctgctcacaggcctgctgaaatcactgaggaccatcaagaccctg
caaaggactgatgttcgactcagtgagatgctggaggaggaggactatcctggtgccatt
cagttgtgtctggaatgtcagaaggctgccagcacattcaaacactacagctgcataagt
gagttgaattccaagctacaagacactctggagcaaatagaggagcagctggatgtggcc
ttgtctaaaacctgcaagcactttgatgtctcccactacaccagagttcagctggcgtac
accctcctggaaaagacccagacggccatggaccagctccacatgcacttcacccaggcc
atccacaacactgtgttccaggtggttctgggatacgtggagctctgtgccggcaacgcc
gacaccaagtttcagaagatgcagtacaaggacctctgcacgcacatcactcaagacagc
tacgtcccctgcctgagcgacctgtgcaaggcattgtgggaggtgatgctcagctaccac
cggaccatgcagtggcatgaggagcaagacaaggaggatcccccacccaccacagatgaa
gcgggtgctgcagacaccgaagaggcggttgttgaccacagctatgtaaagaagaaactg
gagcatggactcactcgaatctggcaggaagtccagctaaaagtgaaagcctatctgctt
ggtacagacatgtctaacttcaaatatgacgacttcattgtggtcttggatgttatcagc
aggctgatgcaagtgggggaggagttctgcggcagtaagtcagagttgctgcaggaatcc
atcaaacgtcagagcgtaaactacttcaagaactaccacaggacacgcctggaggagttg
cggatgtttctggaaaatgagacgtgggaactgtgtcctgtcaagtccaacttcaacatc
gctcagctccatgagtttaagttcatgggtcagagccggtccccttcagtgtctcccagt
agacaggtgttgtccagtcaggaccaggtgttgtccagcaaggaccaggaagtcctgtct
ctgtttcagcacttcagtcaggaggggaacccctttgagaggcacatcgacaacaaagat
gaggagactgaggacgtactggcctccaacgggtatgagtccgatgagctggagaagtgt
gtgtaccaggactatgacagcgacagtgacgtccctgatgaactcaagcaggactacgtg
gacgagcagaccggagacgtccctctcaagagtgcgtcaagggagaccctgcgcagcagg
aagaagtctgactacagcctaaacaaaggctccaacgctcccatcctgaccaacacaacc
ctcaacgtgatccgtctggtcgggaagtacatacagatgatgaacattctgaaaccaata
gcctttgacgtcatccactgtgtttcccagctgtttgattactacctgtatgctgtctac
accttcttcggccgcaatgatatgcctgcccctagcctgggtgtgcccggcagccagggg
ggcagggaggctggtccggccaggcctgttgcccctttttgctggtatgaatcatcaggt
ccgggtctgatcagcagccgactgagaacaacacttaacagaatccaggagagcctcatc
caaatggattctctgggggaaggcagctccagcgtgcacggtggtccgggggaggacaga
aaggagaaggtgcccagcccccacctcagccagcttgtggtcctgacagctagcgagacc
ctctacggcctggcccagagggtggtcgccacagagtcactggtgtttctggccgagcag
tttgagttccttcagtctcacctcgacaccatgatgcctgcagccaagaagccgttcctc
cagcagttctactcacagactgtctccacggctagcgagctccgtaaacccatatactgg
gtggtggcggccaaggctttagactacgaacagatgctgctgctgatggctggagttaag
tgggacattagggagataatgtcgcagcacaacgtgtacgtggacgtcctgttaaaggag
tttgaagagtttaacaagaggctgggtgatgtgtccagacacgtccgggtccctctgcct
gtgtctaatgtcctgtgggaacactgcatccgtctggccaacaggacgctggtggaaggc
tatggtaacgtgaagaagtgcagtaacgaagggcgggccctgatgcagctggacttccag
cagttcctgatgaagcttgagaagctgacggacatgaggcccatccctgacaaggacttt
gtggagacctacatcaaagcctactacctgacggagaatgacatggagcagttcatcaag
aaccacagggaatactccatgaagcagctggccaacctggtgaacgtgtgtctgggctct
cacatcaacaagaaggcccggcagaaactcctggcggctatcgacgacatcgacagacca
aagagatag
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